Bug #3677
closed
why default runMaxLikeAlignment.php to 1 ?
Added by Anchi Cheng about 9 years ago.
Updated almost 7 years ago.
Affected Version:
Appion/Leginon 3.2
Description
r19231 changes the stable branch to use one processor for maxlmum likelyhood alignment. Doesn't this take way too long to be a reasonable default ?
- Status changed from Assigned to Closed
- Assignee deleted (
Neil Voss)
- Priority changed from Immediate to Normal
- Description updated (diff)
- Status changed from Closed to Assigned
- Assignee set to Neil Voss
I sent you a separate email last year, it was because of docker and I thought you reverted it, because it was still 4 in docker.
- Assignee changed from Neil Voss to Anchi Cheng
Hi Anchi, Can you revert this back to 4 in the myami 3.2 branch?
$nproc = ($_POST['nproc']) ? $_POST['nproc'] : '1';
Should be
$nproc = ($_POST['nproc']) ? $_POST['nproc'] : '4';
Not sure the best way to set the default, because it is cluster specific, but everywhere else this is the '4'.
Maybe the best is to default to None or empty string and add a validation and force users to think and set a reasonable value for their case. Not sure how to get it to interact with the process time estimate, though. What do you think ?
- Status changed from Assigned to Closed
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