Appion

/gpfs/appion/zzhang/16feb12g/stacks/stack14

stack creation given error msgs:
... writing stack to disk from memory: /gpfs/appion/zzhang/16feb12g/stacks/stack14/16feb12g_walter_018gr_04sq_02hl_02en-a.hed
... wrote 2 particles to header file
... finished in 8.21 msec
... reading stack from disk into memory: 16feb12g_walter_018gr_04sq_02hl_02en-a.hed
... read 2 particles equaling 40.5 kB in size
... finished in 2.1 msec
... gathering mean and stdev data
Traceback (most recent call last):
File "/opt/myamisnap/bin/makestack2.py", line 1213, in <module>
makeStack.run()
File "/opt/myamisnap/lib/appionlib/appionLoop2.py", line 86, in run
results = self.loopProcessImage(imgdata)
File "/opt/myamisnap/lib/appionlib/appionLoop2.py", line 136, in loopProcessImage
return self.processImage(imgdata)
File "/opt/myamisnap/lib/appionlib/apParticleExtractor.py", line 510, in processImage
total_processed_particles = self.processParticles(imgdata,partdatas,shiftdata)
File "/opt/myamisnap/bin/makestack2.py", line 76, in processParticles
self.boxedpartdatas, self.imgstackfile, self.partmeantree = self.boxParticlesFromImage(imgdata, partdatas, shiftdata)
File "/opt/myamisnap/bin/makestack2.py", line 234, in boxParticlesFromImage
partmeantree = self.calculateParticleStackStats(imgstackfile, boxedpartdatas)
File "/opt/myamisnap/bin/makestack2.py", line 303, in calculateParticleStackStats
apDisplay.printError("Standard deviation 0 for particle d in image %s"(i,self.shortname))
File "/opt/myamisnap/lib/appionlib/apDisplay.py", line 65, in printError
raise Exception, colorString("\n * FATAL ERROR *\n"+text+"\n\a","red")
Exception: * FATAL ERROR *
Standard deviation 0 for particle 0 in image 16feb12g_walter_018gr_04sq_02hl_02en-a