Feature #4020
closeddo DE images frame alignment using different gain reference
0%
Description
The DE20 images need to reprocess with different gain reference. There is no option to do this in Appion. Could Anchi do this?
Updated by Anchi Cheng about 8 years ago
- Tracker changed from Task to Feature
- Project changed from Leginon to Appion
- Subject changed from repeat the DE20 images alignment using different gain reference to do DE images frame alignment using different gain reference
- Status changed from New to Assigned
- Assignee set to Anchi Cheng
- Target version set to Appion/Leginon 3.2
r19575 adds the feature.
Updated by Anchi Cheng about 8 years ago
- Status changed from Assigned to In Test
- Assignee changed from Anchi Cheng to Zhening Zhang
Until we have a web interface for this option, here is how to use it.
1. Find an image that uses the gain/dark reference you want to apply to the frames in DE image frame alignment program. It does not need to be in the same session.
2. In myamiweb imageviewer, click on "i" to show image report of the image.
3. imageid under "Image Information" heading is the number you need.
4. When copying the alignment command to the terminal of the computer, append " --refimgid=" and end with the imageid found in step 4.
5. Run the command with the added option. It should give an warning that it is using the references from this image.
Updated by Anchi Cheng over 6 years ago
- Status changed from In Test to Closed
Would like to user filename but it will be a very slow query since we can not assume that it is in the same session. Will not do that.