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Bug #4064
openmakeDDRawFrameStack.py need to handle error of frame files
Start date:
03/26/2016
Due date:
% Done:
0%
Estimated time:
Affected Version:
Appion/Leginon 3.2
Show in known bugs:
No
Workaround:
Description
Starting image 0 ( skip:303, remain:3 ) id:574238, file: 16mar25f_09gr_029sq_013hln_02enm ... Pixel size: 1.09699 rawframe_basepath /gpfs/frames/acheng/16mar25f/rawdata ... Setting new camera info.... ... Reference comes from current image ... Reference comes from current image ... Reference comes from current image ... Reference comes from current image !!! DEBUG: frame flip True, frame_rotate 0 !!! DEBUG: frame flip True, frame_rotate 0 flipping frame stack Traceback (most recent call last): File "/emg/sw/packages/myamisnap/appion/bin/makeDDRawFrameStack.py", line 203, in <module> makeStack.run() File "/emg/sw/packages/myamisnap/appion/appionlib/appionLoop2.py", line 87, in run results = self.loopProcessImage(imgdata) File "/emg/sw/packages/myamisnap/appion/appionlib/appionLoop2.py", line 137, in loopProcessImage return self.processImage(imgdata) File "/emg/sw/packages/myamisnap/appion/bin/makeDDRawFrameStack.py", line 155, in processImage self.dd.makeRawFrameStackForOneStepCorrectAlign(self.params['rawarea']) File "/emg/sw/packages/myamisnap/appion/appionlib/apDDprocess.py", line 965, in makeRawFrameStackForOneStepCorrectAlign a = numpy.fliplr(a) File "/usr/lib64/python2.6/site-packages/numpy/lib/twodim_base.py", line 61, in fliplr raise ValueError, "Input must be >= 2-d." ValueError: Input must be >= 2-d.
This frame stack is shorter than the later ones and was the first image taken after I've increased the exposure time from 7 seconds to 10 seconds and therefore from 35 frames to 50 frames.
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