Bug #412
closedpixel size error when combining stacks
100%
Description
When combining two stacks from different sessions the start.hed file reports that the pixel size is 0 angstroms even though both combining stacks have the correct pixel size of 2 angstroms. EMAN then cannot perform a proper reconstruction estimate.
http://amilab16.scripps.edu/myami/processing/stackreport.php?expId=7486&sId=20
Updated by Neil Voss over 14 years ago
- Status changed from New to Assigned
- Assignee set to Anna-Clare Milazzo
The bug you report is a reporting error, but it is correct in the database. I noticed that the pixelsize is actually reported 4 times on that page. Two are in Angstroms, one is in meters and one in set to zero.
Independent of the mis-reported values, I think the stack has the correct pixelsize. So, can you explain more about the "EMAN then cannot perform a proper reconstruction estimate."
Updated by Neil Voss over 14 years ago
- Assignee changed from Anna-Clare Milazzo to Neil Voss
Updated by Neil Voss over 14 years ago
- Subject changed from pixel size error in start.hed file when combining stacks from different sessions on goby to pixel size error when combining stacks
This is a general error for all combine stacks.
Updated by Neil Voss over 14 years ago
- Status changed from Assigned to In Code Review
- Assignee changed from Neil Voss to Amber Herold
- % Done changed from 0 to 100
Fixed in r13864, r13865, and r13866.
Updated by Amber Herold over 14 years ago
- Status changed from In Code Review to In Test
- Assignee changed from Amber Herold to Anna-Clare Milazzo
Updated by Neil Voss over 14 years ago
- Target version set to Appion/Leginon 2.0.0
Updated by Neil Voss over 14 years ago
- Assignee changed from Anna-Clare Milazzo to Anke Mulder
combine a couple stack with different pixels sizes and make sure it gives an error.
Updated by Anke Mulder over 14 years ago
- Status changed from In Test to Closed
Combine two stacks with different box sizes, and an error is reported in the LOG file. Done.