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Bug #4403

closed

aux directory prevents git checkout on Windows

Added by Anchi Cheng about 8 years ago. Updated almost 7 years ago.

Status:
Closed
Priority:
High
Assignee:
Category:
-
Target version:
Start date:
08/22/2016
Due date:
% Done:

0%

Estimated time:
Affected Version:
Appion/Leginon 3.3
Show in known bugs:
No
Workaround:

Description

programs/protomo2/python has a directory call aux.

It turns out that aux is a reserved work on Windows. See:

https://github.com/swcarpentry/DEPRECATED-bc/issues/463

Will need a different name.

This has high priority since a pyscope update is needed soon with some of my new changes. Thanks.

Actions #1

Updated by Anchi Cheng about 8 years ago

  • Assignee changed from Alex Noble to Scott Stagg
  • Affected Version changed from Appion/Leginon 3.2 to Appion/Leginon 3.3

Scott, I reassign this to you rather than Alex since you were the one committed proptomo2 code. From what I can tell, the name is only referenced in configure.sh and should be o.k. to change.

Actions #2

Updated by Alex Noble about 8 years ago

Hi Anchi,

I have never seen an aux directory in Appion, where is it?

As far as I know, Protomo doesn't make such a directory.

-Alex

Actions #3

Updated by Anchi Cheng about 8 years ago

It is in the Protomo2 source code Scott put in

myami/programs/protomo2/python

Actions #4

Updated by Anchi Cheng about 8 years ago

  • Status changed from Assigned to In Test

I can not wait any more. Changed it myself from aux to auxillary and Windows git checkout was successful after that.

Scott, if you don't have time to test compilation, assign it back and I will ask others to test.

Actions #5

Updated by Anchi Cheng almost 7 years ago

  • Status changed from In Test to Closed
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