Appion

Hi Anchi, when you changed the function getCtfExtrema() to add extra_phase_shift, you broke a bunch of my other functions. The function is called 43 times in the python code and you did not change any in the bin folder:

./appion/appionlib/apCtf/ctfdisplay.py
./appion/appionlib/apCtf/ctftools.py
./appion/appionlib/apCtf/findastig.py
./appion/bin/ctfRefine.py
./appion/bin/interactiveCtf.py
./appion/bin/phasorCtf.py

Can we move the extra_phase_shift to the end of the function? Because there are a lot of changes that need to be made.

Sorry about not changing function calls in the bin. However, I did search and made changes in ctftools.py and ctfdisplay.py.
http://emg.nysbc.org/projects/appion/repository/diff/appion/appionlib/apCtf?utf8=✓&rev=1d14cf39a3855902f1cd565d00edd93f2553ff0b&rev_to=fcc2fb434a17ceaddfbb604e49f10c2953cc71f7

I don't know what you mean by moving the change to the end of the function.

Yeah, I see you did a lot of change never mind about moving the value, I thought it might be faster to change, but I'll just have to change the rest of the bin functions.