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Bug #4540

open

template picking error message

Added by Zhening Zhang about 8 years ago.

Status:
New
Priority:
Normal
Assignee:
-
Category:
-
Target version:
-
Start date:
10/20/2016
Due date:
% Done:

0%

Estimated time:
Affected Version:
Appion/Leginon 3.2
Show in known bugs:
No
Workaround:

Description

When I resume one of my old template picking run, there is an error message. The directory is:-rundir=/gpfs/appion/zzhang/16jul15c/extract/tmplrun3. The command used is:
/opt/myamisnap/bin/appion templateCorrelator.py --projectid=141 --rundir=/gpfs/appion/zzhang/16jul15c/extract/tmplrun3copy --runname=tmplrun3copy --session=16jul15c --binby=1 --nproc=1 --medianval=3 --pdiam=54 --preset=en --pixlimit=4.0 --maxthresh=1.5 --maxsize=1.0 --tiltangle=all --hpval=0.0 --minthresh=0.5 --overlapmult=1.5 --lpval=15.0 --best-images --planereg --maxpeaks=1500 --thread-findem --continue --commit --no-wait --peaktype=centerofmass --template-list=9,8,7,6,4,3,1 --range-list=0,360,15x0,360,15x0,360,15x0,360,15x0,360,15x0,360,15x0,360,15 --expid=2309 --jobtype=templatecorrelato

File "/opt/myamisnap/bin/templateCorrelator.py", line 8, in <module>
imgLoop.run()
File "/opt/myamisnap/lib/appionlib/appionLoop2.py", line 65, in run
self.preLoopFunctions()
File "/opt/myamisnap/lib/appionlib/apTemplateCorrelator.py", line 139, in preLoopFunctions
apTemplate.getTemplates(self.params)
File "/opt/myamisnap/lib/appionlib/apTemplate.py", line 67, in getTemplates
scalefactor = templatedata['apix'] / params['apix']
KeyError: 'apix'

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