Appion

No obvious error. Tried on different stacks, one of which I was able to successfully center yesterday. Gets hung up on both SEMC and guppy clusters.

Command:

/opt/myamisnap/bin/appion centerParticleStack.py --stack-id=47 --description="center" --commit --rundir=/gpfs/appion/araczkowski/rjain/16nov18e/stacks/centered47 --runname=centered47 --projectid=165 --expid=2977 --jobtype=makestack

Output:

 ... Time stamp: 16nov29k26
 ... Function name: centerParticleStack
 ... Appion directory: /opt/myamisnap/lib
 ... Processing hostname: guppy-16
 ... Using split database
^[[0;32mConnected to database: 'nyap_165'^[[0m
 ... Committing data to database
 ... Run directory: /gpfs/appion/araczkowski/rjain/16nov18e/stacks/centered47
^[[1;33m!!! WARNING: directory '/gpfs/appion/araczkowski/rjain/16nov18e/stacks/centered47' already exists.^[[0m
 ... Writing function log to: centerParticleStack.log
 ... Uploading ScriptData....
 ... Found 1 processors on this machine
 ... Running Appion version 'trunk'
 ... Getting stack data for stackid=47
Old stack info: ^[[0;36m'tmplrun3 bin2 144 box'^[[0m
 ... checking that original stack is numbered
 ... Centering stack: /gpfs/appion/araczkowski/rjain/16nov18e/stacks/stack11/start.hed
 ... file is 1.4 GB, mem is 15.1 GB
 ... file is 1.4 GB, will be split into 1 fractions
^[[0;35mEMAN: ^[[0mcenalignint /gpfs/appion/araczkowski/rjain/16nov18e/stacks/stack11/start.hed