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Bug #4904

open

FindEM produces artifacts when image dimensions have a large prime factor

Added by Neil Voss over 7 years ago. Updated over 7 years ago.

Status:
In Test
Priority:
Normal
Category:
-
Target version:
-
Start date:
04/14/2017
Due date:
% Done:

0%

Estimated time:
Affected Version:
Appion/Leginon 3.2
Show in known bugs:
No
Workaround:

Description

Artifacts were present with a prime factor of 37, but not a prime factor of 29, so setting the limit to 30.

Need to think about how changing image size will affect make stack.

Right now we are cutting center of the image out, but 3710x3838 trims to 3696x3828. Losing 14 pixels means 7 pixels from the edges, so possible each particle would be off center by 7 pixels. I would trim from the corner, but I cannot remember which corner (upper right, lower left) that I need to trim from.


Related issues 2 (2 open0 closed)

Related to Appion - Bug #6530: Particle picks off center with K3 New01/11/2019

Actions
Related to Appion - Bug #5133: picks not centeredIn Code ReviewAnchi Cheng08/07/2017

Actions
Actions #1

Updated by Neil Voss over 7 years ago

  • Status changed from Assigned to In Test
  • Assignee changed from Neil Voss to Bridget Carragher
Actions #2

Updated by Neil Voss almost 6 years ago

  • Related to Bug #6530: Particle picks off center with K3 added
Actions #3

Updated by Neil Voss almost 6 years ago

  • Related to Bug #5133: picks not centered added
Actions

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