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Bug #5354

closed

need pixelsize and ctf phase shift in quickstack output star file to run relion processing

Added by Anchi Cheng about 7 years ago. Updated almost 7 years ago.

Status:
Closed
Priority:
High
Assignee:
Neil Voss
Category:
-
Target version:
Appion/Leginon 3.3
Start date:
12/08/2017
Due date:
% Done:

0%

Estimated time:
Affected Version:
Appion/Leginon 3.3
Show in known bugs:
No
Workaround:

Description

Missing

rlnPhaseShift
rlnMagnification
rlnDetectorPixelSize
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 #1

Updated by Neil Voss about 7 years ago

Phase shift is from the CTF table and Magnification is somewhere is the Leginon database.

Do we have the 'Detector Pixel Size' somewhere? I know uploaded images would not have it, should I just fake it like we do in CTFFIND3?

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 #2

Updated by Anchi Cheng about 7 years ago

Even Relion output fakes it, too. It is silly to ask that now a day.

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 #3

Updated by Anchi Cheng almost 7 years ago

  • Status changed from Assigned to Closed

done

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