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Bug #548

closed

Unable to upload reconstruction-- new error

Added by Anna-Clare Milazzo over 14 years ago. Updated over 14 years ago.

Status:
Closed
Priority:
Normal
Assignee:
-
Category:
-
Target version:
Appion/Leginon 2.0.2
Start date:
05/24/2010
Due date:
% Done:

100%

Estimated time:
Affected Version:
Appion/Leginon 2.0.1
Show in known bugs:
Workaround:

Description

http://amilab16.scripps.edu/myami/processing/checkAppionJob.php?expId=7519&jobId=129

I am getting the following error from the terminal output when I try uploading a reconstruction:

uploadRecon.start()
File "/opt/appion/bin/uploadRecon.py", line 784, in start
self.insertRefinementRun()
File "/opt/appion/bin/uploadRecon.py", line 321, in insertRefinementRun
runq['num_iter']=self.params['iterations']
File "/usr/lib/python2.4/site-packages/sinedon/data.py", line 497, in setitem
super(Data, self).__setitem__(key, value)
File "/usr/lib/python2.4/site-packages/sinedon/newdict.py", line 74, in setitem
value = validator(value)
TypeError: int() argument must be a string or a number

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 #1

Updated by Neil Voss over 14 years ago

  • Status changed from New to In Code Review
  • Assignee changed from Neil Voss to Amber Herold

Hi Anna, nice to see that you are back processing. Things have calmed down here considerably.

I fixed the bug, and renamed self.params['iterations'] to self.iterationdatas to avoid confusion (by me) in r14144. I will try and get this to goby as soon as I can.

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 #2

Updated by Amber Herold over 14 years ago

  • Status changed from In Code Review to In Test
  • Assignee changed from Amber Herold to Anna-Clare Milazzo
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 #3

Updated by Anna-Clare Milazzo over 14 years ago

Still seems to be giving me the same error but maybe Neil hasn't had a chance to change this on goby yet?

uploadRecon.start()
File "/opt/appion/bin/uploadRecon.py", line 784, in start
self.insertRefinementRun()
File "/opt/appion/bin/uploadRecon.py", line 321, in insertRefinementRun
runq['num_iter']=self.params['iterations']
File "/usr/lib/python2.4/site-packages/sinedon/data.py", line 497, in setitem
super(Data, self).__setitem__(key, value)
File "/usr/lib/python2.4/site-packages/sinedon/newdict.py", line 74, in setitem
value = validator(value)
TypeError: int() argument must be a string or a number

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 #4

Updated by Neil Voss over 14 years ago

  • Status changed from In Test to Assigned
  • Assignee changed from Anna-Clare Milazzo to Christopher Irving
  • % Done changed from 0 to 100

It has not been updated yet. We will be updating Goby to the new stable branch soon.

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 #5

Updated by Neil Voss over 14 years ago

  • Status changed from Assigned to Closed
  • Assignee deleted (Christopher Irving)
  • Affected Version set to Appion/Leginon 2.0.1
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 #6

Updated by Neil Voss over 14 years ago

  • Target version set to Appion/Leginon 2.0.2
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