Bug #730
closedemanJobGen.php gives garbage output directory name when the rawdata is archived
100%
Description
The archived image path does not contain "rawdata" in the name, The regular expression match failed and the output path created becomes an invalid path. This is an unusual case since I need to further process a combined stack between an active session 06jul12a and an archived session 06mar09a. Maybe we should forbid such reprocessing but I don't need the rawdata for the further processing, only the combined stack in appion which is available.
Testing:
1. provide ssh login info for the cluster at appion/processing page.
1. click to start Eman Refinement in http://cronus3.scripps.edu/myamiweb/processing/index.php?expId=3310
2. choose any initial model and the default stack to Create Job Form.
3. The output, cluster, and dmf directory are all badly formed.
output directory should be start with /ami/ and end with /appion/06mar09a/recon/
cluster directory should end with /06mar09a/recon/, so does dmf directory if available.
Updated by Anchi Cheng over 14 years ago
Make it use the stack's path to create the rootpath and put up an warning that manual entry is needed if that fails also.
refs r14470
Updated by Anchi Cheng over 14 years ago
- Status changed from Assigned to In Code Review
- Assignee changed from Anchi Cheng to Neil Voss
- % Done changed from 0 to 100
Any other place need this?
Updated by Neil Voss over 14 years ago
- Status changed from In Code Review to Closed
- Assignee deleted (
Neil Voss) - Target version set to Appion/Leginon 2.1.0
- Affected Version changed from Appion/Leginon 2.0.1 to Pre-2.0
Code review is fine and it works for my new and old runs.