Feature #8747
openUpload particle coordinates from single Relion star file
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Description
Current upload coordinates command only lets you upload a list of starfiles, with the assumption that the micrograph name is encoded in the star filename (e.g. foo_gr_867_sq_5_hl_309_enn-a-DW.star). Particles picked by some programs, such as Warp, output a single star file with filename listed on each line in the appropriate relion column.
This change now treats a single uploaded file as such a starfile, so it processes inputs of a single file as a star file with a rln_MicrographName column properly.
Note: Uploading a single EMAN boxfile or a single relion starfile without a rln_MicrographName column will now fail, but this is likely a very rare problem
Updated by William Rice almost 5 years ago
- Tracker changed from Bug to Feature
- Affected Version deleted (
Appion/Leginon 3.5) - Show in known bugs deleted (
No)
Updated by Anchi Cheng almost 5 years ago
- Status changed from New to Assigned
- Assignee set to William Rice
- Target version set to Appion/Leginon 3.5
Bill,
I changed the first line of text to use python specified by /usr/bin/env like all other python code in Appion.
Hope that does not cause problems for you.
Updated by William Rice almost 5 years ago
No problem, sorry about that. I have tested it several times now and it has not run into any issues uploading star files from Warp.