Bug #4137
Updated by Anchi Cheng over 8 years ago
Andrey from COLU reported that his references were not in the frames directory. /gpfs/frames/16apr20e/rawdata/references/ /gpfs/frames/amalyutin/16apr20e/rawdata/references/ The references present are: -rw-r--r-- 1 amalyutin colu 55M Apr 20 11:04 16apr18e_18145152_01_3838x3710_norm_0.mrc -rw-r--r-- 1 amalyutin colu 55M Apr 20 11:04 16apr18e_18145152_01_3838x3710_norm_0_mod.mrc -rw-r--r-- 1 amalyutin colu 55M Apr 20 11:04 16mar23i_24154245_00_3838x3710_dark_0.mrc -rw-r--r-- 1 amalyutin colu 55M Apr 20 11:04 16mar23i_24154245_00_3838x3710_dark_0_mod.mrc However, looking at references/reference_list.txt /gpfs/frames/amalyutin/16apr20e/rawdata/references/reference_list.txt his references are in /emg/data18/leginon/16feb08_ref_c/rawdata/16apr20e_20114130_01_3838x3710_norm_0.mrc /emg/data18/leginon/xiangli/16feb08_ref_c/rawdata/16apr20e_20114130_01_3838x3710_norm_0.mrc The references should also include: -rw-rw-r-- 1 amalyutin colu 55M Apr 20 11:41 /emg/data18/leginon/xiangli/16feb08_ref_c/rawdata/16apr20e_20114129_00_3838x3710_bright_0.mrc -rw-rw-r-- 1 amalyutin colu 55M Apr 20 11:41 /emg/data18/leginon/xiangli/16feb08_ref_c/rawdata/16apr20e_20114130_01_3838x3710_norm_0.mrc -rw-rw-r-- 1 amalyutin colu 55M Apr 20 11:43 /emg/data18/leginon/xiangli/16feb08_ref_c/rawdata/16apr20e_20114344_02_3838x3710_bright_1.mrc -rw-rw-r-- 1 amalyutin colu 55M Apr 20 11:43 /emg/data18/leginon/xiangli/16feb08_ref_c/rawdata/16apr20e_20114345_03_3838x3710_norm_1.mrc > From: "Malyutin, Andrey" <am4327@cumc.columbia.edu> > Subject: RE: [SEMC Krios1] Scheduling Krios sessions (open beta: COLU) > Date: April 27, 2016 at 3:32:02 PM EDT > To: Edward Eng <eeng@nysbc.org> > > Good afternoon Ed, > > I'm quite positive we've collected bright/dark/ and norm images. Images in Leginon link to "16apr20e_20114130_01_3838x3710_norm_0.mrc". It could have been collected while Christoph was logged into Leginon, but I believe all recent reference images go to the same directory? > > Thank you, > > Andrey > From: Edward Eng [eeng@nysbc.org] > Sent: Wednesday, April 27, 2016 3:15 PM > To: Malyutin, Andrey > Subject: Re: [SEMC Krios1] Scheduling Krios sessions (open beta: COLU) > > Hello Andrey, > > Did you do any gain references on the 20th? I do not see them. Otherwise they will use the most recent references that were taken. > > Best, > Ed > > > On Apr 26, 2016, at 5:09 PM, Malyutin, Andrey <am4327@cumc.columbia.edu> wrote: > > Good evening Ed, > > I've taken a look at the images on the harddrive and turns out I have the reference images from the previous session (the 18th). It's probably not a big deal, but anyway you could upload the references from my session (16apr20e*) to a dropbox? > > Many thanks, > > Andrey