2010 ADWCreate an image uploader program from scratch » History » Revision 6
Revision 5 (Neil Voss, 06/11/2010 09:43 AM) → Revision 6/11 (Neil Voss, 06/11/2010 09:43 AM)
h1. Create an image uploader program from scratch h2. Problem statement: We want to upload images, including defocal pairs into the database * four types of data collection: tomogram, tiltseries (RCT/OTR), defocal pairs, and normal * current version does tiltseries (maybe tomogram series) and normal, but not defocal pairs h2. Background info for defocal pairs images are linked using h2. New python program: h4. determine what the inputs are and what is required: * folder with images * pixel size * tiltseries/defocal information (# per set) * two session modes, create new session or append to existing session ** appending to a session is a dangerous things, so I am not going to support it. ** single mode simplifies things dramatically * input defocus and tilt angle: ** optionally allow a batch file for individual defocus and angle information<pre> imagename <tab> defocus <tab> angle</pre> ** have override commandline flags<pre> --anglelist=-45,0,45 --defocus=-2.0e-6</pre> * four data collection modes: ** tomogram: we cannot support uploading tomograms, pipeline requires Leginon information ** RCT/OTR requires a tiltseries connection ** defocal pairs require a AcquisitionImageTargetData connection, source:trunk/appion/appionlib/apDefocalPairs.py#L28 source:trunk/appion/appionlib/apDefocalPairs.py ** normal does not need these ** run the program ** uploading to the database * Create new php interface