2010 ADWCreate an image uploader program from scratch » History » Revision 7
Revision 6 (Neil Voss, 06/11/2010 09:43 AM) → Revision 7/11 (Neil Voss, 06/11/2010 09:46 AM)
h1. Create an image uploader program from scratch h2. Problem statement: We want to upload images, including defocal pairs into the database * four types of data collection: tomogram, tiltseries (RCT/OTR), defocal pairs, and normal * current version does tiltseries (maybe tomogram series) and normal, but not defocal pairs h2. Background info for defocal pairs images are linked using h2. New python program: h4. determine what the inputs are and what is required: # * folder with mrc images – only support mrc files # * pixel size, specified in meters size # * tiltseries/defocal information (# per set) – cannot have both<pre> --images-per-tilt-series=3 --images-per-defocal-group=3</pre> # * two session modes, create new session or append to existing session #* ** appending to a session is a dangerous things, so I am not going to support it. #* ** single mode simplifies things dramatically # * input defocus and tilt angle: #* ** optionally allow a batch file for individual defocus and angle information<pre> imagename <tab> defocus <tab> angle</pre> #* ** have override commandline flags<pre> --anglelist=-45,0,45 --defocus=-2.0e-6</pre> # * four data collection modes: #* *tomogram*: ** tomogram: we cannot support uploading tomograms, pipeline requires Leginon information #* *RCT/OTR*: ** RCT/OTR requires a tiltseries connection #* *defocal pairs*: ** defocal pairs require a AcquisitionImageTargetData connection, source:trunk/appion/appionlib/apDefocalPairs.py#L28 #* *normal mode*: ** normal does not need any special treatment these ** run the program ** uploading to the database * Create new php interface