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2010 Appion Developer Workshop » History » Revision 15

Revision 14 (Neil Voss, 06/10/2010 08:56 AM) → Revision 15/18 (Neil Voss, 06/10/2010 09:56 AM)

h1. 2010 Appion Developer Workshop 

 h2. Setting up a development enviroment 

 h4. Subversion 

 <pre> 
 svn checkout http://emg.nysbc.org/svn/myami/trunk/ myami/ 
 </pre> 

 h4. Sinedon.cfg 

 At AMI, you do not normally need a sinedon.cfg file, but if you have your own testing environment you will need one. 

 h4. Web page 

 At AMI, put myamiweb into your ami_html directory and it will be available on both cronus3 and fly as http://cronus3.scripps.edu/~username/myamiweb/ 

 You will need to run Eric's web setup wizard to get it working: http://cronus3.scripps.edu/~username/myamiweb/setup/ 


 Your PYTHONPATH should contain both the myami folder and the myami/appion folder. 


 ______ 

 h2. Add a new option to a program 

 [[2010 ADW/Add a new option to a program]] 

 ______ 

 h2. Organization of the Python programs 

 [[2010 ADW/Organization of the Python programs]] 

 ______ 

 h2. Organization of the PHP programs 

 [[2010 ADW/Organization of the PHP programs]] 

 ______ 

 h2. Create a program from scratch 

 [[2010 ADW/Create a * Problem statement: I have program from scratch]] X that I want to put into the pipeline: 
 ** EMAN 2d alignment, "refine2d.py":http://blake.bcm.tmc.edu/eman/eman1/progs/refine2d.py.html or "classalign2":http://blake.bcm.tmc.edu/eman/eman1/progs/classalign2.html 
 ** Bsoft program, nothing really any good 


 ______ 

 h2. Create a program, database structure, and report pages from scratch (if time) 

 * 3D MSA?