Align tilt series » History » Version 11
Anke Mulder, 06/03/2010 05:51 PM
| 1 | 1 | Anke Mulder | h1. Align tilt series |
|---|---|---|---|
| 2 | |||
| 3 | 10 | Anke Mulder | !http://emg.nysbc.org/attachments/267/Picture_62.png! |
| 4 | 5 | Anke Mulder | |
| 5 | 3 | Anke Mulder | h2. General Workflow: |
| 6 | |||
| 7 | # Select the tiltseries for which a tomogram is to be calculated. |
||
| 8 | # Check the runname and enter a description. |
||
| 9 | 1 | Anke Mulder | # Use the radio button to select Protomo Refinement or IMOD shift-only alignment. |
| 10 | 4 | Anke Mulder | # To submit the job to the cluster click the "Align Tilt Series" button. Alternatively, click on "Just Show Command" to obtain a command that can be pasted into a UNIX shell. |
| 11 | 1 | Anke Mulder | !http://emg.nysbc.org/attachments/263/Picture_55.png! |
| 12 | 8 | Anke Mulder | # If your job has been submitted to the cluster, a page will appear with a link "Check status of job", which allows tracking of the job via its log-file. This link is also accessible from the "1 running" option under the "Aliogn tilt series" submenu in the appion sidebar. |
| 13 | # Now click on the "1 Complete" link under the "Align tilt series" submenu. This opens a summary of all tilt series alignment runs. |
||
| 14 | 9 | Anke Mulder | !http://emg.nysbc.org/attachments/266/Picture_61.png! |
| 15 | 11 | Anke Mulder | # |
| 16 | !http://emg.nysbc.org/attachments/268/Picture_65.png! |
||
| 17 | # |
||
| 18 | 3 | Anke Mulder | |
| 19 | h2. Notes, Comments, and Suggestions: |
||
| 20 | |||
| 21 | 2 | Anke Mulder | |
| 22 | ______ |
||
| 23 | |||
| 24 | [[Tomography|< Tomography]] | [[Create full tomogram|Create Full Tomogram >]] |
||
| 25 | |||
| 26 | ______ |