Align tilt series » History » Revision 11
Revision 10 (Anke Mulder, 06/03/2010 05:39 PM) → Revision 11/29 (Anke Mulder, 06/03/2010 05:51 PM)
h1. Align tilt series !http://emg.nysbc.org/attachments/267/Picture_62.png! h2. General Workflow: # Select the tiltseries for which a tomogram is to be calculated. # Check the runname and enter a description. # Use the radio button to select Protomo Refinement or IMOD shift-only alignment. # To submit the job to the cluster click the "Align Tilt Series" button. Alternatively, click on "Just Show Command" to obtain a command that can be pasted into a UNIX shell. !http://emg.nysbc.org/attachments/263/Picture_55.png! # If your job has been submitted to the cluster, a page will appear with a link "Check status of job", which allows tracking of the job via its log-file. This link is also accessible from the "1 running" option under the "Aliogn tilt series" submenu in the appion sidebar. # Now click on the "1 Complete" link under the "Align tilt series" submenu. This opens a summary of all tilt series alignment runs. !http://emg.nysbc.org/attachments/266/Picture_61.png! # !http://emg.nysbc.org/attachments/268/Picture_65.png! # h2. Notes, Comments, and Suggestions: ______ [[Tomography|< Tomography]] | [[Create full tomogram|Create Full Tomogram >]] ______