Align tilt series » History » Version 9
Anke Mulder, 06/03/2010 05:37 PM
| 1 | 1 | Anke Mulder | h1. Align tilt series |
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| 3 | 6 | Anke Mulder | h2. IMOD Citation: |
| 4 | 4 | Anke Mulder | !http://emg.nysbc.org/attachments/264/Picture_56.png! |
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| 6 | 6 | Anke Mulder | h2. ProTomo Citation: |
| 7 | 5 | Anke Mulder | !http://emg.nysbc.org/attachments/261/Picture_50.png! |
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| 9 | 3 | Anke Mulder | h2. General Workflow: |
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| 11 | # Select the tiltseries for which a tomogram is to be calculated. |
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| 12 | # Check the runname and enter a description. |
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| 13 | 1 | Anke Mulder | # Use the radio button to select Protomo Refinement or IMOD shift-only alignment. |
| 14 | 4 | Anke Mulder | # To submit the job to the cluster click the "Align Tilt Series" button. Alternatively, click on "Just Show Command" to obtain a command that can be pasted into a UNIX shell. |
| 15 | 1 | Anke Mulder | !http://emg.nysbc.org/attachments/263/Picture_55.png! |
| 16 | 8 | Anke Mulder | # If your job has been submitted to the cluster, a page will appear with a link "Check status of job", which allows tracking of the job via its log-file. This link is also accessible from the "1 running" option under the "Aliogn tilt series" submenu in the appion sidebar. |
| 17 | # Now click on the "1 Complete" link under the "Align tilt series" submenu. This opens a summary of all tilt series alignment runs. |
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| 18 | 9 | Anke Mulder | !http://emg.nysbc.org/attachments/266/Picture_61.png! |
| 19 | 3 | Anke Mulder | |
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| 21 | h2. Notes, Comments, and Suggestions: |
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| 23 | 2 | Anke Mulder | |
| 24 | ______ |
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| 26 | [[Tomography|< Tomography]] | [[Create full tomogram|Create Full Tomogram >]] |
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| 28 | ______ |