Appion Manual » History » Revision 19
Revision 18 (Amber Herold, 04/22/2010 12:50 PM) → Revision 19/33 (Amber Herold, 04/22/2010 12:55 PM)
h1. Appion Manual
# [[An Introduction to Appion]]
## [[What is Appion?]]
## [[System Requirements]]
## [[Authors]]
# [[Complete Installation]]
## [[Instructions for installing CentOS on your computer]]
## [[Download additional Software]]
## [[Database Server Installation]]
## [[Processing Server Installation]]
### [[Install supporting packages]]
### [[Download Appion Files]]
### [[Perform system check]]
### [[Install Appion Packages]]
### [[Configure leginon.cfg]]
### [[Explanation of Sample Names]]
### [[Configure sinedon.cfg]]
### [[Install External Packages]]
### [[Compile FindEM]]
### [[Compile Ace2]]
### [[Compile Radermacher]]
### [[Install Xmipp]]
### [[Test Appion]]
## [[Web Server Installation]]
### [[Differences between Linux flavors]]
### [[Install Web Server Prerequisites]]
### [[Configure php.ini]]
### [[Install Apache Web Server]]
### [[Check php information]]
### [[Install the MRC PHP Extension]]
### [[Install the Web Interface]]
### [[Potential Problems]]
## [[Create a Test Project]]
## [[Setup Remote Processing]]
# [[Upgrade Instructions]]
# [[Appion User Guide]]
## [[Appion and Leginon Database Tools]]
### [[Administration]]
#### [[Groups]]
#### [[Users]]
#### [[Instruments]]
#### [[Default Settings]]
#### [[Calibrations]]
#### [[Applications]]
#### [[Goniometer]]
### [[User Management]]
#### [[Enable User Authentication]]
#### [[New User Registration]]
#### [[Retrieve Forgotten Password]]
#### [[Modify Your Profile]]
#### [[Logout]]
### [[Project DB]]
#### [[View Projects]]
#### [[Create New Project]]
#### [[Edit Project Description]]
#### [[Edit Project Owners]]
#### [[Create a Project Processing Database]]
#### [[Unlink a Project Processing Database]]
#### [[Upload Images to a new Project Session]]
#### [[Share a Project Session with another User]]
#### [[View a Summary of a Project Session]]
#### [[Grid Management]]
### [[Image Viewers]]
#### [[Image Viewer]]
#### [[2 Way Viewer]]
#### [[3 Way Viewer]]
#### [[Dual Viewer]]
#### [[Image Tools]]
### [[LOI - Leginon Observer Interface]]
### [[RCT]]
### [[Tomography]]
### [[Hole Template Viewer]]
## [[Appion Processing]]
### [[Terminology]]
### [[Common Workflow]]
### [[Processing Cluster Login]]
### [[Particle Selection]]
### [[CTF Estimation]]
### [[Import Tools]]
### [[Image Assessment]]
### [[Region Mask Creation]]