Appion Manual » History » Revision 20
Revision 19 (Amber Herold, 04/22/2010 12:55 PM) → Revision 20/33 (Amber Herold, 04/22/2010 12:57 PM)
h1. Appion Manual # [[An Introduction to Appion]] ## [[What is Appion?]] ## [[System Requirements]] ## [[Authors]] # [[Complete Installation]] ## [[Instructions for installing CentOS on your computer]] ## [[Download additional Software]] ## [[Database Server Installation]] ## [[Processing Server Installation]] ### [[Install supporting packages]] ### [[Download Appion Files]] ### [[Perform system check]] ### [[Install Appion Packages]] ### [[Configure leginon.cfg]] ### [[Explanation of Sample Names]] ### [[Configure sinedon.cfg]] ### [[Install External Packages]] ### [[Compile FindEM]] ### [[Compile Ace2]] ### [[Compile Radermacher]] ### [[Install Xmipp]] ### [[Test Appion]] ## [[Web Server Installation]] ### [[Differences between Linux flavors]] ### [[Install Web Server Prerequisites]] ### [[Configure php.ini]] ### [[Install Apache Web Server]] ### [[Check php information]] ### [[Install the MRC PHP Extension]] ### [[Install the Web Interface]] ### [[Potential Problems]] ## [[Create a Test Project]] ## [[Setup Remote Processing]] # [[Upgrade Instructions]] # [[Appion User Guide]] ## [[Appion and Leginon Database Tools]] ### [[Administration]] #### [[Groups]] #### [[Users]] #### [[Instruments]] #### [[Default Settings]] #### [[Calibrations]] #### [[Applications]] #### [[Goniometer]] ### [[User Management]] #### [[Enable User Authentication]] #### [[New User Registration]] #### [[Retrieve Forgotten Password]] #### [[Modify Your Profile]] #### [[Logout]] ### [[Project DB]] #### [[View Projects]] #### [[Create New Project]] #### [[Edit Project Description]] #### [[Edit Project Owners]] #### [[Create a Project Processing Database]] #### [[Unlink a Project Processing Database]] #### [[Upload Images to a new Project Session]] #### [[Share a Project Session with another User]] #### [[View a Summary of a Project Session]] #### [[Grid Management]] ### [[Image Viewers]] #### [[Image Viewer]] #### [[2 Way Viewer]] #### [[3 Way Viewer]] #### [[Dual Viewer]] #### [[Image Tools]] ### [[LOI - Leginon Observer Interface]] ### [[RCT]] ### [[Tomography]] ### [[Hole Template Viewer]] ## [[Appion Processing]] ### [[Terminology]] ### [[Common Workflow]] ### [[Processing Cluster Login]] ### [[Particle Selection]] #### [[Template Picking]] #### [[Dog Picking]] #### [[Manual Picking]] ### [[CTF Estimation]] #### [[Ace Estimation]] #### [[Ace 2 Estimation]] #### [[CtfTilt Estimation]] ### [[Import Tools]] #### [[PDB tp Model]] #### [[EMDB to Model]] #### [[Upload Particles]] #### [[Upload Template]] #### [[Upload Model]] #### [[Upload More Images]] #### [[Upload Stack]] ### [[Image Assessment]] #### [[Web Img Assessment]] #### [[Multi Img Assessment]] #### [[Run Image Rejector]] ### [[Region Mask Creation]] #### [[Crud Finding]] #### [[Manual Masking]]