Appion Manual » History » Version 25
Amber Herold, 05/12/2010 10:37 AM
| 1 | 1 | Amber Herold | h1. Appion Manual |
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| 3 | 7 | Amber Herold | |
| 4 | 21 | Amber Herold | # *[[An Introduction to Appion]]* |
| 5 | 9 | Amber Herold | ## [[What is Appion?]] |
| 6 | ## [[System Requirements]] |
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| 7 | ## [[Authors]] |
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| 8 | 22 | Amber Herold | # *[[Complete Installation]]* |
| 9 | 9 | Amber Herold | ## [[Instructions for installing CentOS on your computer]] |
| 10 | ## [[Download additional Software]] |
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| 11 | ## [[Database Server Installation]] |
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| 12 | ## [[Processing Server Installation]] |
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| 13 | ## [[Web Server Installation]] |
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| 14 | ## [[Create a Test Project]] |
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| 15 | ## [[Setup Remote Processing]] |
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| 16 | 22 | Amber Herold | # *[[Upgrade Instructions]]* |
| 17 | # *[[Appion User Guide]]* |
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| 18 | 10 | Amber Herold | ## [[Appion and Leginon Database Tools]] |
| 19 | 12 | Amber Herold | ### [[Administration]] |
| 20 | 16 | Amber Herold | #### [[Groups]] |
| 21 | #### [[Users]] |
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| 22 | #### [[Instruments]] |
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| 23 | #### [[Default Settings]] |
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| 24 | #### [[Calibrations]] |
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| 25 | #### [[Applications]] |
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| 26 | #### [[Goniometer]] |
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| 27 | 12 | Amber Herold | ### [[User Management]] |
| 28 | 17 | Amber Herold | #### [[Enable User Authentication]] |
| 29 | #### [[New User Registration]] |
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| 30 | #### [[Retrieve Forgotten Password]] |
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| 31 | #### [[Modify Your Profile]] |
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| 32 | #### [[Logout]] |
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| 33 | 12 | Amber Herold | ### [[Project DB]] |
| 34 | 18 | Amber Herold | #### [[View Projects]] |
| 35 | #### [[Create New Project]] |
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| 36 | #### [[Edit Project Description]] |
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| 37 | #### [[Edit Project Owners]] |
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| 38 | #### [[Create a Project Processing Database]] |
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| 39 | #### [[Unlink a Project Processing Database]] |
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| 40 | #### [[Upload Images to a new Project Session]] |
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| 41 | #### [[Share a Project Session with another User]] |
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| 42 | #### [[View a Summary of a Project Session]] |
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| 43 | #### [[Grid Management]] |
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| 44 | 12 | Amber Herold | ### [[Image Viewers]] |
| 45 | 23 | Amber Herold | #### [[Common Features]] |
| 46 | #### [[Image Tools]] |
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| 47 | 19 | Amber Herold | #### [[Image Viewer]] |
| 48 | #### [[2 Way Viewer]] |
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| 49 | #### [[3 Way Viewer]] |
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| 50 | #### [[Dual Viewer]] |
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| 51 | 12 | Amber Herold | ### [[LOI - Leginon Observer Interface]] |
| 52 | ### [[RCT]] |
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| 53 | ### [[Tomography]] |
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| 54 | ### [[Hole Template Viewer]] |
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| 55 | 11 | Amber Herold | ## [[Appion Processing]] |
| 56 | 12 | Amber Herold | ### [[Terminology]] |
| 57 | ### [[Common Workflow]] |
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| 58 | ### [[Processing Cluster Login]] |
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| 59 | ### [[Particle Selection]] |
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| 60 | 20 | Amber Herold | #### [[Template Picking]] |
| 61 | #### [[Dog Picking]] |
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| 62 | #### [[Manual Picking]] |
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| 63 | 12 | Amber Herold | ### [[CTF Estimation]] |
| 64 | 20 | Amber Herold | #### [[Ace Estimation]] |
| 65 | #### [[Ace 2 Estimation]] |
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| 66 | #### [[CtfTilt Estimation]] |
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| 67 | 12 | Amber Herold | ### [[Import Tools]] |
| 68 | 20 | Amber Herold | #### [[PDB tp Model]] |
| 69 | #### [[EMDB to Model]] |
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| 70 | #### [[Upload Particles]] |
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| 71 | #### [[Upload Template]] |
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| 72 | #### [[Upload Model]] |
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| 73 | #### [[Upload More Images]] |
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| 74 | #### [[Upload Stack]] |
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| 75 | 12 | Amber Herold | ### [[Image Assessment]] |
| 76 | 20 | Amber Herold | #### [[Web Img Assessment]] |
| 77 | #### [[Multi Img Assessment]] |
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| 78 | #### [[Run Image Rejector]] |
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| 79 | 8 | Amber Herold | ### [[Region Mask Creation]] |
| 80 | 20 | Amber Herold | #### [[Crud Finding]] |
| 81 | #### [[Manual Masking]] |