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Appion Manual » History » Version 26

Amber Herold, 05/12/2010 10:39 AM

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h1. Appion Manual
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# *[[An Introduction to Appion]]*





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## [[What is Appion?]]





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## [[System Requirements]]





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## [[Authors]]





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# *[[Complete Installation]]*





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## [[Instructions for installing CentOS on your computer]]





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## [[Download additional Software]]





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## [[Database Server Installation]]





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## [[Processing Server Installation]]





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## [[Web Server Installation]]





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## [[Create a Test Project]]





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## [[Setup Remote Processing]]





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# *[[Upgrade Instructions]]*





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# *[[Appion User Guide]]*





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## [[Appion and Leginon Database Tools]]





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### [[Administration]]





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### [[User Management]]





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### [[Project DB]]





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### [[Image Viewers]]





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### [[LOI - Leginon Observer Interface]]





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### [[RCT]]





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### [[Tomography]]





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### [[Hole Template Viewer]]





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## [[Appion Processing]]





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### [[Terminology]]





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### [[Common Workflow]]





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### [[Processing Cluster Login]]





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### [[Particle Selection]]





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#### [[Template Picking]]





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#### [[Dog Picking]]





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#### [[Manual Picking]] 





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### [[CTF Estimation]]





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#### [[Ace Estimation]]





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#### [[Ace 2 Estimation]]





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#### [[CtfTilt Estimation]]





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### [[Import Tools]]





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#### [[PDB tp Model]]





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#### [[EMDB to Model]]





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#### [[Upload Particles]]





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#### [[Upload Template]]





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#### [[Upload Model]]





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#### [[Upload More Images]]





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#### [[Upload Stack]]





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### [[Image Assessment]]





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#### [[Web Img Assessment]]





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#### [[Multi Img Assessment]]





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#### [[Run Image Rejector]]





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### [[Region Mask Creation]]





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#### [[Crud Finding]]





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#### [[Manual Masking]]