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Appion Processing » History » Version 11

Arne Moeller, 06/03/2010 12:06 PM

1 1 Amber Herold
h1. Appion Processing
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## [[Terminology]]
4 10 Anke Mulder
## [[Common Workflow]]
5 8 Anke Mulder
### [[Step by Step Guide]]
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### [[Quality Assessment]]
7 1 Amber Herold
## [[Processing Cluster Login]]
8 4 Anke Mulder
## [[Particle Selection]] (Arne)
9 1 Amber Herold
### [[Template Picking]]
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### [[Dog Picking]]
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### [[Manual Picking]] 
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### [[Repeat from other session]]
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### [[Align and Edit Tilt Pairs]]
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### [[Auto Align Tilt Pairs]]
15 4 Anke Mulder
## [[CTF Estimation]] (Anke)
16 1 Amber Herold
### [[Ace Estimation]]
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### [[Ace 2 Estimation]]
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### [[CtfTilt Estimation]]
19 3 Anke Mulder
### [[Repeat from other session]]
20 4 Anke Mulder
## [[Stacks]] (Arne)
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### [[Stack creation]]
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### [[more stack tools]]
23 4 Anke Mulder
## [[Particle Alignment]] (Anke)
24 3 Anke Mulder
### [[Run Alignment]]
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### [[Run Feature Analysis]]
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### [[Run Particle Clustering]]
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## [[Ab Initio Reconstruction]]
28 4 Anke Mulder
### [[RCT Volume]] (Anke)
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### [[OTR Volume]] (PickWei)
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### [[EMAN Common Lines]] (Dmitry)
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### [[IMAGIC Angular Reconstitution]] 
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## [[Refine Reconstruction]] (Dmitry)
33 3 Anke Mulder
### [[EMAN Refinement]]
34 4 Anke Mulder
## [[Import Tools]] (PickWei)
35 6 Pick-Wei Lau
### [[PDB to Model]]
36 1 Amber Herold
### [[EMDB to Model]]
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### [[Upload Particles]]
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### [[Upload Template]]
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### [[Upload Model]]
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### [[Upload More Images]]
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### [[Upload Stack]]
42 4 Anke Mulder
## [[Image Assessment]] (PickWei)
43 1 Amber Herold
### [[Web Img Assessment]]
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### [[Multi Img Assessment]]
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### [[Run Image Rejector]]
46 4 Anke Mulder
## [[Region Mask Creation]](PickWei)
47 1 Amber Herold
### [[Crud Finding]]
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### [[Manual Masking]] 
49 4 Anke Mulder
## [[Synthetic Data]] (Dmitry)
50 3 Anke Mulder
### [[Synthetic Dataset Creation]]
51 5 Amber Herold
52 2 Amber Herold
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[[Appion and Leginon Database Tools|< Appion and Leginon Database Tools]]
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