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Appion Processing » History » Version 13

Anke Mulder, 06/03/2010 04:36 PM

1 1 Amber Herold
h1. Appion Processing
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## [[Terminology]]
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## [[Common Workflow]]
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### [[Step by Step Guide]]
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### [[Quality Assessment]]
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## [[Processing Cluster Login]]
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## [[Particle Selection]] (Arne)
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### [[Template Picking]]
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### [[Dog Picking]]
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### [[Manual Picking]] 
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### [[Repeat from other session]]
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### [[Align and Edit Tilt Pairs]]
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### [[Auto Align Tilt Pairs]]
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## [[CTF Estimation]] (Anke)
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### [[Ace Estimation]]
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### [[Ace 2 Estimation]]
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### [[CtfTilt Estimation]]
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### [[Repeat from other session]]
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## [[Stacks]] (Arne)
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### [[Stack creation]]
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### [[more stack tools]]
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## [[Particle Alignment]] (Anke)
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### [[Run Alignment]]
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### [[Run Feature Analysis]]
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### [[Run Particle Clustering]]
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## [[Ab Initio Reconstruction]]
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### [[RCT Volume]] (Anke)
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### [[OTR Volume]] (PickWei)
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### [[EMAN Common Lines]] (Dmitry)
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### [[IMAGIC Angular Reconstitution]] 
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## [[Refine Reconstruction]] (Dmitry)
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### [[EMAN Refinement]]
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## [[Import Tools]] (PickWei)
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### [[PDB to Model]]
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### [[EMDB to Model]]
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### [[Upload Particles]]
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### [[Upload Template]]
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### [[Upload Model]]
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### [[Upload More Images]]
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### [[Upload Stack]]
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## [[Image Assessment]] (PickWei)
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### [[Web Img Assessment]]
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### [[Multi Img Assessment]]
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### [[Run Image Rejector]]
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## [[Region Mask Creation]](PickWei)
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### [[Crud Finding]]
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### [[Manual Masking]] 
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## [[Synthetic Data]] (Dmitry)
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### [[Synthetic Dataset Creation]]
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[[Appion and Leginon Database Tools|< Appion and Leginon Database Tools]]
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