Appion Processing » History » Version 15
Anke Mulder, 06/03/2010 05:00 PM
1 | 1 | Amber Herold | h1. Appion Processing |
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2 | |||
3 | ## [[Terminology]] |
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4 | 10 | Anke Mulder | ## [[Common Workflow]] |
5 | 8 | Anke Mulder | ### [[Step by Step Guide]] |
6 | ### [[Quality Assessment]] |
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7 | 1 | Amber Herold | ## [[Processing Cluster Login]] |
8 | 4 | Anke Mulder | ## [[Particle Selection]] (Arne) |
9 | 1 | Amber Herold | ### [[Template Picking]] |
10 | ### [[Dog Picking]] |
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11 | ### [[Manual Picking]] |
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12 | 3 | Anke Mulder | ### [[Repeat from other session]] |
13 | ### [[Align and Edit Tilt Pairs]] |
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14 | ### [[Auto Align Tilt Pairs]] |
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15 | 4 | Anke Mulder | ## [[CTF Estimation]] (Anke) |
16 | 1 | Amber Herold | ### [[Ace Estimation]] |
17 | ### [[Ace 2 Estimation]] |
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18 | 13 | Anke Mulder | ### [[CtfTilt Estimation]] |
19 | 3 | Anke Mulder | ### [[Repeat from other session]] |
20 | 4 | Anke Mulder | ## [[Stacks]] (Arne) |
21 | 3 | Anke Mulder | ### [[Stack creation]] |
22 | ### [[more stack tools]] |
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23 | 4 | Anke Mulder | ## [[Particle Alignment]] (Anke) |
24 | 3 | Anke Mulder | ### [[Run Alignment]] |
25 | ### [[Run Feature Analysis]] |
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26 | ### [[Run Particle Clustering]] |
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27 | ## [[Ab Initio Reconstruction]] |
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28 | 4 | Anke Mulder | ### [[RCT Volume]] (Anke) |
29 | ### [[OTR Volume]] (PickWei) |
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30 | ### [[EMAN Common Lines]] (Dmitry) |
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31 | ### [[IMAGIC Angular Reconstitution]] |
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32 | ## [[Refine Reconstruction]] (Dmitry) |
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33 | 3 | Anke Mulder | ### [[EMAN Refinement]] |
34 | 14 | Anke Mulder | ### [[Frealign Refinement]] |
35 | 15 | Anke Mulder | ## [[Tomography]] |
36 | 4 | Anke Mulder | ## [[Import Tools]] (PickWei) |
37 | 6 | Pick-Wei Lau | ### [[PDB to Model]] |
38 | 1 | Amber Herold | ### [[EMDB to Model]] |
39 | ### [[Upload Particles]] |
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40 | ### [[Upload Template]] |
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41 | ### [[Upload Model]] |
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42 | ### [[Upload More Images]] |
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43 | ### [[Upload Stack]] |
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44 | 4 | Anke Mulder | ## [[Image Assessment]] (PickWei) |
45 | 1 | Amber Herold | ### [[Web Img Assessment]] |
46 | ### [[Multi Img Assessment]] |
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47 | ### [[Run Image Rejector]] |
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48 | 4 | Anke Mulder | ## [[Region Mask Creation]](PickWei) |
49 | 1 | Amber Herold | ### [[Crud Finding]] |
50 | ### [[Manual Masking]] |
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51 | 4 | Anke Mulder | ## [[Synthetic Data]] (Dmitry) |
52 | 3 | Anke Mulder | ### [[Synthetic Dataset Creation]] |
53 | 5 | Amber Herold | |
54 | 2 | Amber Herold | ______ |
55 | |||
56 | [[Appion and Leginon Database Tools|< Appion and Leginon Database Tools]] |
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57 | |||
58 | ______ |