Appion Processing » History » Revision 17
Revision 16 (Anke Mulder, 06/03/2010 05:00 PM) → Revision 17/69 (Anke Mulder, 06/03/2010 05:04 PM)
h1. Appion Processing
## [[Terminology]]
## [[Common Workflow]]
### [[Step by Step Guide]]
### [[Quality Assessment]]
## [[Processing Cluster Login]]
## [[Particle Selection]] (Arne)
### [[Template Picking]]
### [[Dog Picking]]
### [[Manual Picking]]
### [[Repeat from other session]]
### [[Align and Edit Tilt Pairs]]
### [[Auto Align Tilt Pairs]]
## [[CTF Estimation]] (Anke)
### [[Ace Estimation]]
### [[Ace 2 Estimation]]
### [[CtfFind Estimation]]
### [[Repeat from other session]]
## [[Stacks]] (Arne)
### [[Stack creation]]
### [[more stack tools]]
## [[Particle Alignment]] (Anke)
### [[Run Alignment]]
### [[Run Feature Analysis]]
### [[Run Particle Clustering]]
## [[Ab Initio Reconstruction]]
### [[RCT Volume]] (Anke)
### [[OTR Volume]] (PickWei)
### [[EMAN Common Lines]] (Dmitry)
### [[IMAGIC Angular Reconstitution]]
## [[Refine Reconstruction]] (Dmitry)
### [[EMAN Refinement]]
### [[Frealign Refinement]]
## [[Tomography]]
### [[Align tilt series]]
### [[Create full tomogram]]
### [[Upload tomogram]]
### [[Create tomogram subvolume]]
### [[Average subvolumes]]
## [[Import Tools]] (PickWei)
### [[PDB to Model]]
### [[EMDB to Model]]
### [[Upload Particles]]
### [[Upload Template]]
### [[Upload Model]]
### [[Upload More Images]]
### [[Upload Stack]]
## [[Image Assessment]] (PickWei)
### [[Web Img Assessment]]
### [[Multi Img Assessment]]
### [[Run Image Rejector]]
## [[Region Mask Creation]](PickWei)
### [[Crud Finding]]
### [[Manual Masking]]
## [[Synthetic Data]] (Dmitry)
### [[Synthetic Dataset Creation]]
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[[Appion and Leginon Database Tools|< Appion and Leginon Database Tools]]
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