Appion Processing » History » Version 18
Anke Mulder, 06/03/2010 06:52 PM
| 1 | 1 | Amber Herold | h1. Appion Processing |
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| 3 | 18 | Anke Mulder | !http://emg.nysbc.org/attachments/277/Picture_81.png! |
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| 5 | 1 | Amber Herold | ## [[Terminology]] |
| 6 | 10 | Anke Mulder | ## [[Common Workflow]] |
| 7 | 8 | Anke Mulder | ### [[Step by Step Guide]] |
| 8 | ### [[Quality Assessment]] |
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| 9 | 1 | Amber Herold | ## [[Processing Cluster Login]] |
| 10 | 4 | Anke Mulder | ## [[Particle Selection]] (Arne) |
| 11 | 1 | Amber Herold | ### [[Template Picking]] |
| 12 | ### [[Dog Picking]] |
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| 13 | ### [[Manual Picking]] |
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| 14 | 3 | Anke Mulder | ### [[Repeat from other session]] |
| 15 | ### [[Align and Edit Tilt Pairs]] |
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| 16 | ### [[Auto Align Tilt Pairs]] |
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| 17 | 4 | Anke Mulder | ## [[CTF Estimation]] (Anke) |
| 18 | 1 | Amber Herold | ### [[Ace Estimation]] |
| 19 | ### [[Ace 2 Estimation]] |
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| 20 | 16 | Anke Mulder | ### [[CtfFind Estimation]] |
| 21 | 3 | Anke Mulder | ### [[Repeat from other session]] |
| 22 | 4 | Anke Mulder | ## [[Stacks]] (Arne) |
| 23 | 3 | Anke Mulder | ### [[Stack creation]] |
| 24 | ### [[more stack tools]] |
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| 25 | 4 | Anke Mulder | ## [[Particle Alignment]] (Anke) |
| 26 | 3 | Anke Mulder | ### [[Run Alignment]] |
| 27 | ### [[Run Feature Analysis]] |
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| 28 | ### [[Run Particle Clustering]] |
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| 29 | ## [[Ab Initio Reconstruction]] |
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| 30 | 4 | Anke Mulder | ### [[RCT Volume]] (Anke) |
| 31 | ### [[OTR Volume]] (PickWei) |
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| 32 | ### [[EMAN Common Lines]] (Dmitry) |
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| 33 | ### [[IMAGIC Angular Reconstitution]] |
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| 34 | ## [[Refine Reconstruction]] (Dmitry) |
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| 35 | 3 | Anke Mulder | ### [[EMAN Refinement]] |
| 36 | 14 | Anke Mulder | ### [[Frealign Refinement]] |
| 37 | 15 | Anke Mulder | ## [[Tomography]] |
| 38 | 17 | Anke Mulder | ### [[Align tilt series]] |
| 39 | ### [[Create full tomogram]] |
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| 40 | ### [[Upload tomogram]] |
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| 41 | ### [[Create tomogram subvolume]] |
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| 42 | ### [[Average subvolumes]] |
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| 43 | 4 | Anke Mulder | ## [[Import Tools]] (PickWei) |
| 44 | 6 | Pick-Wei Lau | ### [[PDB to Model]] |
| 45 | 1 | Amber Herold | ### [[EMDB to Model]] |
| 46 | ### [[Upload Particles]] |
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| 47 | ### [[Upload Template]] |
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| 48 | ### [[Upload Model]] |
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| 49 | ### [[Upload More Images]] |
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| 50 | ### [[Upload Stack]] |
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| 51 | 4 | Anke Mulder | ## [[Image Assessment]] (PickWei) |
| 52 | 1 | Amber Herold | ### [[Web Img Assessment]] |
| 53 | ### [[Multi Img Assessment]] |
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| 54 | ### [[Run Image Rejector]] |
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| 55 | 4 | Anke Mulder | ## [[Region Mask Creation]](PickWei) |
| 56 | 1 | Amber Herold | ### [[Crud Finding]] |
| 57 | ### [[Manual Masking]] |
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| 58 | 4 | Anke Mulder | ## [[Synthetic Data]] (Dmitry) |
| 59 | 3 | Anke Mulder | ### [[Synthetic Dataset Creation]] |
| 60 | 5 | Amber Herold | |
| 61 | 2 | Amber Herold | ______ |
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| 63 | [[Appion and Leginon Database Tools|< Appion and Leginon Database Tools]] |
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| 65 | ______ |