Appion Processing » History » Version 19
Anke Mulder, 06/03/2010 07:01 PM
| 1 | 1 | Amber Herold | h1. Appion Processing |
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| 2 | |||
| 3 | ## [[Terminology]] |
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| 4 | 10 | Anke Mulder | ## [[Common Workflow]] |
| 5 | 8 | Anke Mulder | ### [[Step by Step Guide]] |
| 6 | ### [[Quality Assessment]] |
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| 7 | 1 | Amber Herold | ## [[Processing Cluster Login]] |
| 8 | 4 | Anke Mulder | ## [[Particle Selection]] (Arne) |
| 9 | 1 | Amber Herold | ### [[Template Picking]] |
| 10 | ### [[Dog Picking]] |
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| 11 | ### [[Manual Picking]] |
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| 12 | 3 | Anke Mulder | ### [[Repeat from other session]] |
| 13 | ### [[Align and Edit Tilt Pairs]] |
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| 14 | ### [[Auto Align Tilt Pairs]] |
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| 15 | 4 | Anke Mulder | ## [[CTF Estimation]] (Anke) |
| 16 | 1 | Amber Herold | ### [[Ace Estimation]] |
| 17 | ### [[Ace 2 Estimation]] |
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| 18 | 16 | Anke Mulder | ### [[CtfFind Estimation]] |
| 19 | 3 | Anke Mulder | ### [[Repeat from other session]] |
| 20 | 4 | Anke Mulder | ## [[Stacks]] (Arne) |
| 21 | 3 | Anke Mulder | ### [[Stack creation]] |
| 22 | ### [[more stack tools]] |
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| 23 | 4 | Anke Mulder | ## [[Particle Alignment]] (Anke) |
| 24 | 3 | Anke Mulder | ### [[Run Alignment]] |
| 25 | ### [[Run Feature Analysis]] |
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| 26 | ### [[Run Particle Clustering]] |
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| 27 | ## [[Ab Initio Reconstruction]] |
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| 28 | 4 | Anke Mulder | ### [[RCT Volume]] (Anke) |
| 29 | ### [[OTR Volume]] (PickWei) |
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| 30 | ### [[EMAN Common Lines]] (Dmitry) |
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| 31 | ### [[IMAGIC Angular Reconstitution]] |
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| 32 | ## [[Refine Reconstruction]] (Dmitry) |
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| 33 | 3 | Anke Mulder | ### [[EMAN Refinement]] |
| 34 | 14 | Anke Mulder | ### [[Frealign Refinement]] |
| 35 | 15 | Anke Mulder | ## [[Tomography]] |
| 36 | 17 | Anke Mulder | ### [[Align tilt series]] |
| 37 | ### [[Create full tomogram]] |
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| 38 | ### [[Upload tomogram]] |
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| 39 | ### [[Create tomogram subvolume]] |
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| 40 | ### [[Average subvolumes]] |
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| 41 | 4 | Anke Mulder | ## [[Import Tools]] (PickWei) |
| 42 | 6 | Pick-Wei Lau | ### [[PDB to Model]] |
| 43 | 1 | Amber Herold | ### [[EMDB to Model]] |
| 44 | ### [[Upload Particles]] |
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| 45 | ### [[Upload Template]] |
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| 46 | ### [[Upload Model]] |
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| 47 | ### [[Upload More Images]] |
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| 48 | ### [[Upload Stack]] |
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| 49 | 4 | Anke Mulder | ## [[Image Assessment]] (PickWei) |
| 50 | 1 | Amber Herold | ### [[Web Img Assessment]] |
| 51 | ### [[Multi Img Assessment]] |
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| 52 | ### [[Run Image Rejector]] |
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| 53 | 4 | Anke Mulder | ## [[Region Mask Creation]](PickWei) |
| 54 | 1 | Amber Herold | ### [[Crud Finding]] |
| 55 | ### [[Manual Masking]] |
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| 56 | ## [[Synthetic Data]] (Dmitry) |
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| 57 | ### [[Synthetic Dataset Creation]] |
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| 58 | 19 | Anke Mulder | |
| 59 | !http://emg.nysbc.org/attachments/277/Picture_81.png! |
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| 60 | 5 | Amber Herold | |
| 61 | 2 | Amber Herold | ______ |
| 62 | |||
| 63 | [[Appion and Leginon Database Tools|< Appion and Leginon Database Tools]] |
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| 64 | |||
| 65 | ______ |