Appion Processing » History » Version 20
Anke Mulder, 06/03/2010 07:25 PM
| 1 | 1 | Amber Herold | h1. Appion Processing |
|---|---|---|---|
| 2 | |||
| 3 | ## [[Terminology]] |
||
| 4 | 10 | Anke Mulder | ## [[Common Workflow]] |
| 5 | 8 | Anke Mulder | ### [[Step by Step Guide]] |
| 6 | ### [[Quality Assessment]] |
||
| 7 | 1 | Amber Herold | ## [[Processing Cluster Login]] |
| 8 | 20 | Anke Mulder | ## [[Particle Selection]] |
| 9 | 1 | Amber Herold | ### [[Template Picking]] |
| 10 | ### [[Dog Picking]] |
||
| 11 | ### [[Manual Picking]] |
||
| 12 | 3 | Anke Mulder | ### [[Repeat from other session]] |
| 13 | ### [[Align and Edit Tilt Pairs]] |
||
| 14 | ### [[Auto Align Tilt Pairs]] |
||
| 15 | 20 | Anke Mulder | ## [[CTF Estimation]] |
| 16 | 1 | Amber Herold | ### [[Ace Estimation]] |
| 17 | ### [[Ace 2 Estimation]] |
||
| 18 | 16 | Anke Mulder | ### [[CtfFind Estimation]] |
| 19 | 3 | Anke Mulder | ### [[Repeat from other session]] |
| 20 | 20 | Anke Mulder | ## [[Stacks]] |
| 21 | 3 | Anke Mulder | ### [[Stack creation]] |
| 22 | ### [[more stack tools]] |
||
| 23 | 20 | Anke Mulder | ## [[Particle Alignment]] |
| 24 | 3 | Anke Mulder | ### [[Run Alignment]] |
| 25 | ### [[Run Feature Analysis]] |
||
| 26 | ### [[Run Particle Clustering]] |
||
| 27 | ## [[Ab Initio Reconstruction]] |
||
| 28 | 20 | Anke Mulder | ### [[RCT Volume]] |
| 29 | ### [[OTR Volume]] |
||
| 30 | ### [[EMAN Common Lines]] |
||
| 31 | 4 | Anke Mulder | ### [[IMAGIC Angular Reconstitution]] |
| 32 | 20 | Anke Mulder | ## [[Refine Reconstruction]] |
| 33 | 3 | Anke Mulder | ### [[EMAN Refinement]] |
| 34 | 14 | Anke Mulder | ### [[Frealign Refinement]] |
| 35 | 15 | Anke Mulder | ## [[Tomography]] |
| 36 | 17 | Anke Mulder | ### [[Align tilt series]] |
| 37 | ### [[Create full tomogram]] |
||
| 38 | ### [[Upload tomogram]] |
||
| 39 | ### [[Create tomogram subvolume]] |
||
| 40 | ### [[Average subvolumes]] |
||
| 41 | 20 | Anke Mulder | ## [[Import Tools]] |
| 42 | 6 | Pick-Wei Lau | ### [[PDB to Model]] |
| 43 | 1 | Amber Herold | ### [[EMDB to Model]] |
| 44 | ### [[Upload Particles]] |
||
| 45 | ### [[Upload Template]] |
||
| 46 | ### [[Upload Model]] |
||
| 47 | ### [[Upload More Images]] |
||
| 48 | ### [[Upload Stack]] |
||
| 49 | 20 | Anke Mulder | ## [[Image Assessment]] |
| 50 | 1 | Amber Herold | ### [[Web Img Assessment]] |
| 51 | ### [[Multi Img Assessment]] |
||
| 52 | ### [[Run Image Rejector]] |
||
| 53 | 20 | Anke Mulder | ## [[Region Mask Creation]] |
| 54 | 1 | Amber Herold | ### [[Crud Finding]] |
| 55 | ### [[Manual Masking]] |
||
| 56 | 20 | Anke Mulder | ## [[Synthetic Data]] |
| 57 | 1 | Amber Herold | ### [[Synthetic Dataset Creation]] |
| 58 | 19 | Anke Mulder | |
| 59 | !http://emg.nysbc.org/attachments/277/Picture_81.png! |
||
| 60 | 5 | Amber Herold | |
| 61 | 2 | Amber Herold | ______ |
| 62 | |||
| 63 | [[Appion and Leginon Database Tools|< Appion and Leginon Database Tools]] |
||
| 64 | |||
| 65 | ______ |