Appion Processing » History » Version 25
Anke Mulder, 06/07/2010 01:11 PM
| 1 | 1 | Amber Herold | h1. Appion Processing |
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| 2 | |||
| 3 | ## [[Terminology]] |
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| 4 | 10 | Anke Mulder | ## [[Common Workflow]] |
| 5 | 8 | Anke Mulder | ### [[Step by Step Guide]] |
| 6 | ### [[Quality Assessment]] |
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| 7 | 1 | Amber Herold | ## [[Processing Cluster Login]] |
| 8 | 20 | Anke Mulder | ## [[Particle Selection]] |
| 9 | 1 | Amber Herold | ### [[Template Picking]] |
| 10 | ### [[Dog Picking]] |
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| 11 | ### [[Manual Picking]] |
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| 12 | 3 | Anke Mulder | ### [[Repeat from other session]] |
| 13 | 24 | Anke Mulder | ### [[Random Conical Tilt Picking]] |
| 14 | #### [[Align and Edit Tilt Pairs]] |
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| 15 | #### [[Auto Align Tilt Pairs]] |
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| 16 | 20 | Anke Mulder | ## [[CTF Estimation]] |
| 17 | 1 | Amber Herold | ### [[Ace Estimation]] |
| 18 | ### [[Ace 2 Estimation]] |
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| 19 | 16 | Anke Mulder | ### [[CtfFind Estimation]] |
| 20 | 3 | Anke Mulder | ### [[Repeat from other session]] |
| 21 | 20 | Anke Mulder | ## [[Stacks]] |
| 22 | 3 | Anke Mulder | ### [[Stack creation]] |
| 23 | ### [[more stack tools]] |
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| 24 | 20 | Anke Mulder | ## [[Particle Alignment]] |
| 25 | 3 | Anke Mulder | ### [[Run Alignment]] |
| 26 | ### [[Run Feature Analysis]] |
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| 27 | ### [[Run Particle Clustering]] |
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| 28 | ## [[Ab Initio Reconstruction]] |
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| 29 | 20 | Anke Mulder | ### [[RCT Volume]] |
| 30 | ### [[OTR Volume]] |
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| 31 | ### [[EMAN Common Lines]] |
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| 32 | 4 | Anke Mulder | ### [[IMAGIC Angular Reconstitution]] |
| 33 | 20 | Anke Mulder | ## [[Refine Reconstruction]] |
| 34 | 3 | Anke Mulder | ### [[EMAN Refinement]] |
| 35 | 14 | Anke Mulder | ### [[Frealign Refinement]] |
| 36 | 25 | Anke Mulder | ### [[SPIDER Refinement]] |
| 37 | ### [[IMAGIC Refinement]] |
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| 38 | 15 | Anke Mulder | ## [[Tomography]] |
| 39 | 17 | Anke Mulder | ### [[Align tilt series]] |
| 40 | ### [[Create full tomogram]] |
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| 41 | ### [[Upload tomogram]] |
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| 42 | ### [[Create tomogram subvolume]] |
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| 43 | ### [[Average subvolumes]] |
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| 44 | 20 | Anke Mulder | ## [[Import Tools]] |
| 45 | 6 | Pick-Wei Lau | ### [[PDB to Model]] |
| 46 | 1 | Amber Herold | ### [[EMDB to Model]] |
| 47 | ### [[Upload Particles]] |
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| 48 | ### [[Upload Template]] |
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| 49 | ### [[Upload Model]] |
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| 50 | ### [[Upload More Images]] |
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| 51 | ### [[Upload Stack]] |
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| 52 | 20 | Anke Mulder | ## [[Image Assessment]] |
| 53 | 1 | Amber Herold | ### [[Web Img Assessment]] |
| 54 | ### [[Multi Img Assessment]] |
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| 55 | ### [[Run Image Rejector]] |
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| 56 | 20 | Anke Mulder | ## [[Region Mask Creation]] |
| 57 | 1 | Amber Herold | ### [[Manual Masking]] |
| 58 | 20 | Anke Mulder | ## [[Synthetic Data]] |
| 59 | 1 | Amber Herold | ### [[Synthetic Dataset Creation]] |
| 60 | 19 | Anke Mulder | |
| 61 | 22 | Anke Mulder | |
| 62 | !http://emg.nysbc.org/attachments/282/Picture_83.png! |
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| 63 | 19 | Anke Mulder | !http://emg.nysbc.org/attachments/277/Picture_81.png! |
| 64 | 22 | Anke Mulder | |
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| 68 | 5 | Amber Herold | |
| 69 | 2 | Amber Herold | ______ |
| 70 | |||
| 71 | [[Appion and Leginon Database Tools|< Appion and Leginon Database Tools]] |
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| 72 | |||
| 73 | ______ |