Appion Processing » History » Revision 34
Revision 33 (Anke Mulder, 06/14/2010 12:12 PM) → Revision 34/69 (Anke Mulder, 06/14/2010 12:14 PM)
h1. Appion Processing
## [[Terminology]]
## [[Common Workflow]]
### [[Step by Step Guide]]
### [[Quality Assessment]]
## [[Processing Cluster Login]]
## [[Particle Selection]]
### [[Template Picking]]
### [[Dog Picking]]
### [[Manual Picking]]
### [[Repeat from other session]]
### [[Random Conical Tilt Picking]]
**** [[Align and Edit Tilt Pairs]]
**** [[Auto Align Tilt Pairs]]
## [[CTF Estimation]]
### [[Ace Estimation]]
### [[Ace 2 Estimation]]
### [[CtfFind Estimation]]
### [[Repeat from other session]]
## [[Stacks]]
### [[Stack creation]]
### [[more stack tools]]
#### [[Combine Stacks]]
#### [[View Stacks]]
***** [[Filter by MeanSTDev]]
***** [[Center Particles]]
***** [[Sort Junk]]
***** [[Create Substack]]
#### [[Alignment SubStacks]]
#### [[ Jumpers SubStack]]
#### [[Convert Stack into Particle Picks]]
## [[Particle Alignment]]
### [[Run Alignment]]
**** [[Xmipp Maximum Likelihood Alignment]]
**** [[Spider Reference-free Alignment]]
**** [[Spider Reference-based Alignment]]
**** [[Ed's Iteration Alignment]]
**** [[Xmipp Reference-based Maximum Likelihood Alignment]]
### [[Run Feature Analysis]]
### [[Run Particle Clustering]]
## [[Ab Initio Reconstruction]]
### [[RCT Volume]]
### [[OTR Volume]]
### [[EMAN Common Lines]]
### [[IMAGIC Angular Reconstitution]]
## [[Refine Reconstruction]]
### [[EMAN Refinement]]
### [[Frealign Refinement]]
### [[SPIDER Refinement]]
### [[IMAGIC Refinement]]
## [[Tomography]]
### [[Align tilt series]]
### [[Create full tomogram]]
### [[Upload tomogram]]
### [[Create tomogram subvolume]]
### [[Average subvolumes]]
## [[Import Tools]]
### [[PDB to Model]]
### [[EMDB to Model]]
### [[Upload Particles]]
### [[Upload Template]]
### [[Upload Model]]
### [[Upload More Images]]
### [[Upload Stack]]
## [[Image Assessment]]
### [[Web Img Assessment]]
### [[Multi Img Assessment]]
### [[Run Image Rejector]]
## [[Region Mask Creation]]
### [[Manual Masking]]
## [[Synthetic Data]]
### [[Synthetic Dataset Creation]]
!http://emg.nysbc.org/attachments/282/Picture_83.png!
!http://emg.nysbc.org/attachments/277/Picture_81.png!
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[[Appion and Leginon Database Tools|< Appion and Leginon Database Tools]]
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