Appion Processing » History » Revision 39
Revision 38 (Anke Mulder, 06/14/2010 12:20 PM) → Revision 39/69 (Anke Mulder, 06/14/2010 03:09 PM)
h1. Appion Processing ## [[Terminology]] ## [[Common Workflow]] *** [[Step by Step Guide]] *** [[Quality Assessment]] ## [[Processing Cluster Login]] ## [[Particle Selection]] *** [[Template Picking]] *** [[Dog Picking]] *** [[Manual Picking]] *** [[Repeat from other session]] *** [[Random Conical Tilt Picking]] **** [[Align and Edit Tilt Pairs]] **** [[Auto Align Tilt Pairs]] ## [[CTF Estimation]] *** [[Ace Estimation]] *** [[Ace 2 Estimation]] *** [[CtfFind Estimation]] *** [[Repeat from other session]] ## [[Stacks]] *** [[Stack creation]] *** [[more stack tools]] **** [[Combine Stacks]] **** [[View Stacks]] ***** [[Filter by MeanSTDev]] ***** [[Center Particles]] ***** [[Sort Junk]] ***** [[Create Substack]] **** [[Alignment SubStacks]] **** [[ Jumpers SubStack]] **** [[Convert Stack into Particle Picks]] ## [[Particle Alignment]] ### [[Run Alignment]] **** [[Xmipp Maximum Likelihood Alignment]] **** [[Spider Reference-free Alignment]] **** [[Spider Reference-based Alignment]] **** [[Ed's Iteration Alignment]] **** [[Xmipp Reference-based Maximum Likelihood Alignment]] ### [[Run Feature Analysis]] **** [[Spider Coran Classification]] **** [[Xmipp Kerden Self-Organizing Map]] **** [[Xmipp Rotational Kerden Self-Organizing Map]] ### [[Run Particle Clustering]] ## [[Ab Initio Reconstruction]] *** [[RCT Volume]] *** [[OTR Volume]] *** [[EMAN Common Lines]] *** [[IMAGIC Angular Reconstitution]] ## [[Refine Reconstruction]] *** [[EMAN Refinement]] *** [[Frealign Refinement]] *** [[SPIDER Refinement]] *** [[IMAGIC Refinement]] ## [[Tomography]] ### [[Align tilt series]] ### [[Create full tomogram]] ### [[Upload_full_tomogram|Upload [[Upload tomogram]] ### [[Create tomogram subvolume]] ### [[Average subvolumes]] ## [[Import Tools]] *** [[PDB to Model]] *** [[EMDB to Model]] *** [[Upload Particles]] *** [[Upload Template]] *** [[Upload Model]] *** [[Upload More Images]] *** [[Upload Stack]] ## [[Image Assessment]] *** [[Web Img Assessment]] *** [[Multi Img Assessment]] *** [[Run Image Rejector]] ## [[Region Mask Creation]] *** [[Manual Masking]] ## [[Synthetic Data]] *** [[Synthetic Dataset Creation]] !http://emg.nysbc.org/attachments/282/Picture_83.png! !http://emg.nysbc.org/attachments/277/Picture_81.png! ______ [[Appion and Leginon Database Tools|< Appion and Leginon Database Tools]] ______