Appion Processing » History » Version 5
Amber Herold, 05/12/2010 10:47 AM
| 1 | 1 | Amber Herold | h1. Appion Processing |
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| 2 | |||
| 3 | ## [[Terminology]] |
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| 4 | ## [[Common Workflow]] |
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| 5 | ## [[Processing Cluster Login]] |
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| 6 | 4 | Anke Mulder | ## [[Particle Selection]] (Arne) |
| 7 | 1 | Amber Herold | ### [[Template Picking]] |
| 8 | ### [[Dog Picking]] |
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| 9 | 3 | Anke Mulder | ### [[Signature]] |
| 10 | 1 | Amber Herold | ### [[Manual Picking]] |
| 11 | 3 | Anke Mulder | ### [[Repeat from other session]] |
| 12 | ### [[Align and Edit Tilt Pairs]] |
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| 13 | ### [[Auto Align Tilt Pairs]] |
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| 14 | 4 | Anke Mulder | ## [[CTF Estimation]] (Anke) |
| 15 | 1 | Amber Herold | ### [[Ace Estimation]] |
| 16 | ### [[Ace 2 Estimation]] |
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| 17 | ### [[CtfTilt Estimation]] |
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| 18 | 3 | Anke Mulder | ### [[Repeat from other session]] |
| 19 | 4 | Anke Mulder | ## [[Stacks]] (Arne) |
| 20 | 3 | Anke Mulder | ### [[Stack creation]] |
| 21 | ### [[more stack tools]] |
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| 22 | 4 | Anke Mulder | ## [[Particle Alignment]] (Anke) |
| 23 | 3 | Anke Mulder | ### [[Run Alignment]] |
| 24 | ### [[Run Feature Analysis]] |
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| 25 | ### [[Run Particle Clustering]] |
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| 26 | ## [[Ab Initio Reconstruction]] |
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| 27 | 4 | Anke Mulder | ### [[RCT Volume]] (Anke) |
| 28 | ### [[OTR Volume]] (PickWei) |
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| 29 | ### [[EMAN Common Lines]] (Dmitry) |
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| 30 | ### [[IMAGIC Angular Reconstitution]] |
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| 31 | ## [[Refine Reconstruction]] (Dmitry) |
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| 32 | 3 | Anke Mulder | ### [[EMAN Refinement]] |
| 33 | 4 | Anke Mulder | ## [[Import Tools]] (PickWei) |
| 34 | 1 | Amber Herold | ### [[PDB tp Model]] |
| 35 | ### [[EMDB to Model]] |
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| 36 | ### [[Upload Particles]] |
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| 37 | ### [[Upload Template]] |
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| 38 | ### [[Upload Model]] |
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| 39 | ### [[Upload More Images]] |
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| 40 | ### [[Upload Stack]] |
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| 41 | 4 | Anke Mulder | ## [[Image Assessment]] (PickWei) |
| 42 | 1 | Amber Herold | ### [[Web Img Assessment]] |
| 43 | ### [[Multi Img Assessment]] |
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| 44 | ### [[Run Image Rejector]] |
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| 45 | 4 | Anke Mulder | ## [[Region Mask Creation]](PickWei) |
| 46 | 1 | Amber Herold | ### [[Crud Finding]] |
| 47 | ### [[Manual Masking]] |
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| 48 | 4 | Anke Mulder | ## [[Synthetic Data]] (Dmitry) |
| 49 | 3 | Anke Mulder | ### [[Synthetic Dataset Creation]] |
| 50 | 5 | Amber Herold | |
| 51 | 2 | Amber Herold | ______ |
| 52 | |||
| 53 | [[Appion and Leginon Database Tools|< Appion and Leginon Database Tools]] |
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| 54 | |||
| 55 | ______ |