Appion Processing » History » Version 6
Pick-Wei Lau, 05/17/2010 10:51 AM
1 | 1 | Amber Herold | h1. Appion Processing |
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2 | |||
3 | ## [[Terminology]] |
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4 | ## [[Common Workflow]] |
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5 | ## [[Processing Cluster Login]] |
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6 | 4 | Anke Mulder | ## [[Particle Selection]] (Arne) |
7 | 1 | Amber Herold | ### [[Template Picking]] |
8 | ### [[Dog Picking]] |
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9 | 3 | Anke Mulder | ### [[Signature]] |
10 | 1 | Amber Herold | ### [[Manual Picking]] |
11 | 3 | Anke Mulder | ### [[Repeat from other session]] |
12 | ### [[Align and Edit Tilt Pairs]] |
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13 | ### [[Auto Align Tilt Pairs]] |
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14 | 4 | Anke Mulder | ## [[CTF Estimation]] (Anke) |
15 | 1 | Amber Herold | ### [[Ace Estimation]] |
16 | ### [[Ace 2 Estimation]] |
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17 | ### [[CtfTilt Estimation]] |
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18 | 3 | Anke Mulder | ### [[Repeat from other session]] |
19 | 4 | Anke Mulder | ## [[Stacks]] (Arne) |
20 | 3 | Anke Mulder | ### [[Stack creation]] |
21 | ### [[more stack tools]] |
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22 | 4 | Anke Mulder | ## [[Particle Alignment]] (Anke) |
23 | 3 | Anke Mulder | ### [[Run Alignment]] |
24 | ### [[Run Feature Analysis]] |
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25 | ### [[Run Particle Clustering]] |
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26 | ## [[Ab Initio Reconstruction]] |
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27 | 4 | Anke Mulder | ### [[RCT Volume]] (Anke) |
28 | ### [[OTR Volume]] (PickWei) |
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29 | ### [[EMAN Common Lines]] (Dmitry) |
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30 | ### [[IMAGIC Angular Reconstitution]] |
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31 | ## [[Refine Reconstruction]] (Dmitry) |
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32 | 3 | Anke Mulder | ### [[EMAN Refinement]] |
33 | 4 | Anke Mulder | ## [[Import Tools]] (PickWei) |
34 | 6 | Pick-Wei Lau | ### [[PDB to Model]] |
35 | 1 | Amber Herold | ### [[EMDB to Model]] |
36 | ### [[Upload Particles]] |
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37 | ### [[Upload Template]] |
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38 | ### [[Upload Model]] |
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39 | ### [[Upload More Images]] |
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40 | ### [[Upload Stack]] |
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41 | 4 | Anke Mulder | ## [[Image Assessment]] (PickWei) |
42 | 1 | Amber Herold | ### [[Web Img Assessment]] |
43 | ### [[Multi Img Assessment]] |
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44 | ### [[Run Image Rejector]] |
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45 | 4 | Anke Mulder | ## [[Region Mask Creation]](PickWei) |
46 | 1 | Amber Herold | ### [[Crud Finding]] |
47 | ### [[Manual Masking]] |
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48 | 4 | Anke Mulder | ## [[Synthetic Data]] (Dmitry) |
49 | 3 | Anke Mulder | ### [[Synthetic Dataset Creation]] |
50 | 5 | Amber Herold | |
51 | 2 | Amber Herold | ______ |
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53 | [[Appion and Leginon Database Tools|< Appion and Leginon Database Tools]] |
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54 | |||
55 | ______ |