Appion Processing » History » Version 8
Anke Mulder, 06/03/2010 11:42 AM
1 | 1 | Amber Herold | h1. Appion Processing |
---|---|---|---|
2 | |||
3 | ## [[Terminology]] |
||
4 | ## [[Common Workflow]] |
||
5 | 8 | Anke Mulder | ### [[Step by Step Guide]] |
6 | ### [[Quality Assessment]] |
||
7 | 1 | Amber Herold | ## [[Processing Cluster Login]] |
8 | 4 | Anke Mulder | ## [[Particle Selection]] (Arne) |
9 | 1 | Amber Herold | ### [[Template Picking]] |
10 | ### [[Dog Picking]] |
||
11 | 3 | Anke Mulder | ### [[Signature]] |
12 | 1 | Amber Herold | ### [[Manual Picking]] |
13 | 3 | Anke Mulder | ### [[Repeat from other session]] |
14 | ### [[Align and Edit Tilt Pairs]] |
||
15 | ### [[Auto Align Tilt Pairs]] |
||
16 | 4 | Anke Mulder | ## [[CTF Estimation]] (Anke) |
17 | 1 | Amber Herold | ### [[Ace Estimation]] |
18 | ### [[Ace 2 Estimation]] |
||
19 | ### [[CtfTilt Estimation]] |
||
20 | 3 | Anke Mulder | ### [[Repeat from other session]] |
21 | 4 | Anke Mulder | ## [[Stacks]] (Arne) |
22 | 3 | Anke Mulder | ### [[Stack creation]] |
23 | ### [[more stack tools]] |
||
24 | 4 | Anke Mulder | ## [[Particle Alignment]] (Anke) |
25 | 3 | Anke Mulder | ### [[Run Alignment]] |
26 | ### [[Run Feature Analysis]] |
||
27 | ### [[Run Particle Clustering]] |
||
28 | ## [[Ab Initio Reconstruction]] |
||
29 | 4 | Anke Mulder | ### [[RCT Volume]] (Anke) |
30 | ### [[OTR Volume]] (PickWei) |
||
31 | ### [[EMAN Common Lines]] (Dmitry) |
||
32 | ### [[IMAGIC Angular Reconstitution]] |
||
33 | ## [[Refine Reconstruction]] (Dmitry) |
||
34 | 3 | Anke Mulder | ### [[EMAN Refinement]] |
35 | 4 | Anke Mulder | ## [[Import Tools]] (PickWei) |
36 | 6 | Pick-Wei Lau | ### [[PDB to Model]] |
37 | 1 | Amber Herold | ### [[EMDB to Model]] |
38 | ### [[Upload Particles]] |
||
39 | ### [[Upload Template]] |
||
40 | ### [[Upload Model]] |
||
41 | ### [[Upload More Images]] |
||
42 | ### [[Upload Stack]] |
||
43 | 4 | Anke Mulder | ## [[Image Assessment]] (PickWei) |
44 | 1 | Amber Herold | ### [[Web Img Assessment]] |
45 | ### [[Multi Img Assessment]] |
||
46 | ### [[Run Image Rejector]] |
||
47 | 4 | Anke Mulder | ## [[Region Mask Creation]](PickWei) |
48 | 1 | Amber Herold | ### [[Crud Finding]] |
49 | ### [[Manual Masking]] |
||
50 | 4 | Anke Mulder | ## [[Synthetic Data]] (Dmitry) |
51 | 3 | Anke Mulder | ### [[Synthetic Dataset Creation]] |
52 | 5 | Amber Herold | |
53 | 2 | Amber Herold | ______ |
54 | |||
55 | [[Appion and Leginon Database Tools|< Appion and Leginon Database Tools]] |
||
56 | |||
57 | ______ |