Project

General

Profile

Appion Processing » History » Revision 8

Revision 7 (Anke Mulder, 06/03/2010 11:42 AM) → Revision 8/69 (Anke Mulder, 06/03/2010 11:42 AM)

h1. Appion Processing 

 ## [[Terminology]] 
 ## [[Common Workflow]] 
 ### [[Step ###[[Step by Step Guide]] 
 ### [[Quality ###[[Quality Assessment]] 
 ## [[Processing Cluster Login]] 
 ## [[Particle Selection]] (Arne) 
 ### [[Template Picking]] 
 ### [[Dog Picking]] 
 ### [[Signature]] 
 ### [[Manual Picking]]  
 ### [[Repeat from other session]] 
 ### [[Align and Edit Tilt Pairs]] 
 ### [[Auto Align Tilt Pairs]] 
 ## [[CTF Estimation]] (Anke) 
 ### [[Ace Estimation]] 
 ### [[Ace 2 Estimation]] 
 ### [[CtfTilt Estimation]] 
 ### [[Repeat from other session]] 
 ## [[Stacks]] (Arne) 
 ### [[Stack creation]] 
 ### [[more stack tools]] 
 ## [[Particle Alignment]] (Anke) 
 ### [[Run Alignment]] 
 ### [[Run Feature Analysis]] 
 ### [[Run Particle Clustering]] 
 ## [[Ab Initio Reconstruction]] 
 ### [[RCT Volume]] (Anke) 
 ### [[OTR Volume]] (PickWei) 
 ### [[EMAN Common Lines]] (Dmitry) 
 ### [[IMAGIC Angular Reconstitution]]  
 ## [[Refine Reconstruction]] (Dmitry) 
 ### [[EMAN Refinement]] 
 ## [[Import Tools]] (PickWei) 
 ### [[PDB to Model]] 
 ### [[EMDB to Model]] 
 ### [[Upload Particles]] 
 ### [[Upload Template]] 
 ### [[Upload Model]] 
 ### [[Upload More Images]] 
 ### [[Upload Stack]] 
 ## [[Image Assessment]] (PickWei) 
 ### [[Web Img Assessment]] 
 ### [[Multi Img Assessment]] 
 ### [[Run Image Rejector]] 
 ## [[Region Mask Creation]](PickWei) 
 ### [[Crud Finding]] 
 ### [[Manual Masking]]  
 ## [[Synthetic Data]] (Dmitry) 
 ### [[Synthetic Dataset Creation]] 

 ______ 

 [[Appion and Leginon Database Tools|< Appion and Leginon Database Tools]] 

 ______