Appion

Appion citations » History » Revision 4

Revision 3 (Amber Herold, 11/10/2010 11:07 AM) → Revision 4/29 (Amber Herold, 11/10/2010 11:13 AM)

h1. Appion citations 

 Appion includes software from the following packages: 

 $title, $year, $authorlist, $journal, $volume=false, $issue=false, $pmid=false, $pmcid=false, $doi=false, $logo=false 

 h3. EMAN 

 EMAN: semiautomated software for high-resolution single-particle reconstructions.", 1999, "Ludtke SJ, Baldwin PR, Chiu W.", "J Struct Biol.", 128, 1, 10600563, false, false, "img/eman_logo.png"); 

 h3. SPIDER 

 SPIDER and WEB: processing and visualization of images in 3D electron microscopy and related fields.", 1996, "Frank J, Radermacher M, Penczek P, Zhu J, Li Y, Ladjadj M, Leith A.", "J Struct Biol.", 116, 1, 8742743, false, false, "img/spider_logo.png"); 

 h3. IMAGIC 

 "A New Generation of the IMAGIC Image Processing System." (1996) van System.", 1996, "van Heel M., Harauz G., Orlova E. V., Schmidt R. & Schatz M. J M", "J Struct Biol. v116(1).    PMID: 8742718   

 Biol", 116, 1, 8742718, false, false, "img/imagic_logo.png"); 

 h3. Appion 

 "Appion: an integrated, database-driven pipeline to facilitate EM image processing." (2009) Lander processing.", 2009, "Lander GC, Stagg SM, Voss NR, et al.. J <i>et&nbsp;al.</i>", "J Struct Biol. v166(1).    PMID: 19263523    Free text: PMC2775544    DOI: 10.1016/j.jsb.2009.01.002  

 Biol.", 166, 1, 19263523, 2775544, "10.1016/j.jsb.2009.01.002", "img/topbarbackgrnd.jpg"); 

 h3. Frealign 

 FREALIGN: high-resolution refinement of single particle structures.", 2007, "Grigorieff, N.", "J Struct Biol.", 157, 1, 16828314, false, "10.1016/j.jsb.2006.05.004", "img/grigorieff_lab.png"); 

 h3. Initial Model 

 A toolbox for ab initio 3-D reconstructions in single-particle electron microscopy.", 2010, "Voss NR, Lyumkis D, Cheng A, <i>et&nbsp;al.</i>", "J Struct Biol.", 169, 3, 20018246, false, false, "img/topbarbackgrnd.jpg"); 

 h3. Dog Picking 

 "DoG Picker and TiltPicker: software tools to facilitate particle selection in single particle electron microscopy." (2009) Voss NR, Yoshioka CK, Radermacher M, Potter CS, Carragher B. J Struct Biol. v166(2).    PMID: 19374019    Free text: PMC2768396   

 h3. ACE 

 "ACE: automated CTF estimation." (2005) Mallick SP, Carragher B, Potter CS, Kriegman DJ. Ultramicroscopy. v104(1).    PMID: 15935913  

 h3. CTFfind 

 "Accurate determination of local defocus and specimen tilt in electron microscopy." (2003) Mindell, JA, Grigorieff N. J Struct Biol. v142(3).    PMID: 12781660   

 h3. XMIPP 

 "Maximum-likelihood multi-reference refinement for electron microscopy images." (2005) Scheres SH, Valle M, Nuñez R, Sorzano CO, Marabini R, Herman GT, Carazo JM. J Mol Biol. v348(1).    PMID: 15808859   
 "Fast maximum-likelihood refinement of electron microscopy images." (2005) Scheres SH, Valle M, Carazo JM. Bioinformatics. v21(Suppl 2).    PMID: 16204112