Appion config advanced » History » Revision 4
Revision 3 (Amber Herold, 08/09/2012 03:01 PM) → Revision 4/5 (Anchi Cheng, 10/30/2013 11:34 AM)
# Enable the processing plug-in by uncommenting out the following line in the file`myamiweb/config.php`
<pre>
addplugin("processing");
</pre>
# IMAGIC and Other features:
<pre>
// Check if IMAGIC is installed and running, otherwise hide all functions
define('HIDE_IMAGIC', false);
// hide processing tools still under development.
define('HIDE_FEATURE', true);
</pre>
# Add processing host information
*Appion version 2.2 and later:*
The following code should be added and modified for each processing host available.
<pre>
$PROCESSING_HOSTS[] = array(
'host' => 'LOCAL_CLUSTER_HEADNODE.INSTITUTE.EDU', // for a single computer installation, this can be 'localhost'
'nproc' => 32, // number of processors available on the host, not used
'nodesdef' => '4', // default number of nodes used by a refinement job
'nodesmax' => '280', // maximum number of nodes a user may request for a refinement job
'ppndef' => '32', // default number of processors per node used for a refinement job
'ppnmax' => '32', // maximum number of processors per node a user may request for a refinement job
'reconpn' => '16', // recons per node, not used
'walltimedef' => '48', // default wall time in hours that a job is allowed to run
'walltimemax' => '240', // maximum hours in wall time a user may request for a job
'cputimedef' => '1536', // default cpu time in hours a job is allowed to run (wall time x number of cpu's)
'cputimemax' => '10000', // maximum cpu time in hours a user may request for a job
'memorymax' => '', // the maximum memory a job may use
'appionbin' => 'bin/', // the path to the myami/appion/bin directory on this host
'appionlibdir' => 'appion/', // the path to the myami/appion/appionlib directory on this host
'baseoutdir' => 'appion', // the directory that processing output should be stored in
'localhelperhost' => '', // a machine that has access to both the web server and the processing host file systems to copy data between the systems
'dirsep' => '/', // the directory separator used by this host
'wrapperpath' => '', // advanced option that enables more than one Appion installation on a single machine, contact us for info
'loginmethod' => 'USERPASSWORD', 'SHAREDKEY', // Appion currently supports 'USERPASSWORD'. 'SHAREKEY' is possible, but not preferable. 'SHAREDKEY' or 'USERPASSWORD'
'loginusername' => '', // if this is not set, Appion uses the username provided by the user in the Appion Processing GUI
'passphrase' => '', // if this is not set, Appion uses the password provided by the user in the Appion Processing GUI
'publickey' => 'rsa.pub', // set this if using 'SHAREDKEY' (not supported
'privatekey' => 'rsa' // set this if using 'SHAREDKEY'
);
</pre>
*Appion version 2.1 and prior:*
<pre>
// --- Please enter your processing host information associate with -- //
// --- Maximum number of the processing nodes -- //
// --- $PROCESSING_HOSTS[] = array('host' => 'host1.school.edu', 'nproc' => 4); -- //
// --- $PROCESSING_HOSTS[] = array('host' => 'host2.school.edu', 'nproc' => 8); -- //
// $PROCESSING_HOSTS[] = array('host' => '', 'nproc' => );
</pre>
# Microscope spherical aberration constant
Not needed for Appion version 2.2 and later. Version 2.1 and earlier only:
<pre>
$DEFAULTCS = "2.0";
</pre>
# Redux server information
This is a very new feature, post Appion 2.2, so you only need this if you are running the trunk or 2.2-redux. trunk.
The Redux server replaces the old mrc_php module and will be released in Appion version 3.0.
[[leginon:Using_Redux_to_serve_images_on_myamiweb|Information on redux parameters to add to the config.php]]