Catch up DD frame alignment » History » Revision 2
Revision 1 (Anchi Cheng, 05/22/2013 12:20 PM) → Revision 2/4 (Anchi Cheng, 05/22/2013 12:32 PM)
h1. Catch up DD frame alignment h1. Gain/Dark Corrected Frame Stack Creation This procedure is to be used with [[GainDark_correction_of_the_raw_frame_with_or_without_drift_correction|Gain/Dark performs the flat field correction of the raw frame ]] when alignment is required movie frames obtained from direct detection camera (DD). !ddtools.jpg! h1. Motion correction As an option, the motion between frames can be corrected by is deferred to gpu-enabled computers. shifting one against the other This is based on doi:10.1038/nmeth.2472 h2. General Workflow: # After at least one image has been processed by makeDDRawFrameStack.py Make sure that appropriate run names and committed directory trees are specified. Appion increments names automatically, but users are free to database, choose the ddstack run from the selection box. # Click on "Just Show Command" to obtain a command that can be pasted into a UNIX shell. # Default uses gpu at id 0. To specify gpu id to, for example, 1, append " --gpuid=1" to the end of the command proprietary names and directories. h2. Notes, Comments, and Suggestions: ______ [[Direct Detector Frame Processing|^Direct Detector Frame Processing]] | [[GainDark_correction_of_the_raw_frame_with_or_without_drift_correction|Gain/Dark correction of the raw frame >]] ______