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Catch up DD frame alignment » History » Revision 3

Revision 2 (Anchi Cheng, 05/22/2013 12:32 PM) → Revision 3/4 (Anchi Cheng, 05/22/2013 12:39 PM)

h1. Catch up DD frame alignment 

 This procedure is to be used with [[GainDark_correction_of_the_raw_frame_with_or_without_drift_correction|Gain/Dark correction of the raw frame ]] when alignment is required by is deferred to gpu-enabled computers.    The resulting aligned sum is uploaded into Leginon as an image under a new preset. If original preset is "ed", then the new preset is named "ed-a".    The aligned frame stack overwrites the unaligned frame stack created in the same directory. 

 This is based on doi:10.1038/nmeth.2472 

 h2. General Workflow: 

 # After at least one image has been processed by makeDDRawFrameStack.py and committed to database, choose the ddstack run from the selection box. 
 # Click on "Just Show Command" to obtain a command that can be pasted into a UNIX shell. 
 # Default uses gpu at id 0.    To specify gpu id to, for example, 1, append " --gpuid=1" to the end of the command 

 h2. Notes, Comments, and Suggestions: 

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 [[Direct Detector Frame Processing|^Direct Detector Frame Processing]] | [[GainDark_correction_of_the_raw_frame_with_or_without_drift_correction|Gain/Dark correction of the raw frame >]] 

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