Compile FindEM » History » Revision 17
Revision 16 (Amber Herold, 12/02/2013 11:29 AM) → Revision 17/19 (Shaker Krit, 03/15/2019 10:56 AM)
h1. Compile FindEM
h2. Install supporting packages:
|_.Name:|_.Download site:|_.yum package name|_.SuSE rpm name|
|compat-gcc-34-g77| |compat-gcc-34-g77||
|gcc-gfortran| |gcc-gfortran| |
|compat-libgfortran-41| |compat-libgfortran-41| |
h2. Test FindEM binary
Both 32 and 64 bit findem binaries are already available in the myami/appion/bin directory.
Test it by changing directories to myami/appion/bin and type the following commands:
<pre>
./findem64.exe (64 bit version)
or
./findem32.exe (32 bit version)
</pre>
If it does not crash you are good.
For CentOS 7 users:
If the following error occurs: "findem64.exe: error while loading shared libraries: libg2c.so.0: cannot open shared object file: No such file or directory"
Follow this link --> https://centos.pkgs.org/7/centos-x86_64/compat-libf2c-34-3.4.6-32.el7.x86_64.rpm.html
Install this --> compat-libf2c-34-3.4.6-32.el7.x86_64.rpm
Then from command line run --> rpm -ivh compat-libf2c-34-3.4.6-32.el7.x86_64.rpm
Make sure the libraries provided by the rpm are present in your "LD_LIBRARY_PATH". In initial testing the libraries were in /usr/lib.
If the following error occurs: "findem64.exe: error while loading shared libraries: libgfortran.so.1: cannot open shared object file: No such file or directory"
Follow this link --> https://centos.pkgs.org/7/centos-x86_64/compat-libgfortran-41-4.1.2-44.el7.x86_64.rpm.html and install "compat-libgfortran-41-4.1.2-44.el7.x86_64.rpm"
From command line run:
rpm -ivh compat-libgfortran-41-4.1.2-44.el7.x86_64.rpm
Make sure the libraries provided by the rpm are present in your "LD_LIBRARY_PATH". In initial testing the libraries were in /usr/lib.
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h2. Install FindEM from source
If the binary included with Appion does not work, or you wish to compile it yourself follow the instructions to [[install FindEM from source]].
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[[Install Grigorieff lab software|< Install Grigorieff lab software]] | [[Install Ace2|Install Ace2 >]]
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