Compile FindEM » History » Revision 18
Revision 17 (Shaker Krit, 03/15/2019 10:56 AM) → Revision 18/19 (Anchi Cheng, 03/26/2019 01:00 AM)
h1. Compile FindEM h2. Install supporting packages: |_.Name:|_.Download site:|_.yum package name|_.SuSE rpm name| |compat-gcc-34-g77| |compat-gcc-34-g77|| |gcc-gfortran| |gcc-gfortran| | |compat-libgfortran-41| |compat-libgfortran-41| | CenOS7 _.Name:|_.Download site:|_.yum package name| |compat-libf2c-34| |compat-libf2c-34| |compat-libgfortran-41| |compat-libgfortran-41| h2. Test FindEM binary Both 32 and 64 bit findem binaries are already available in the myami/appion/bin directory. Test it by changing directories to myami/appion/bin and type the following commands: <pre> ./findem64.exe (64 bit version) or ./findem32.exe (32 bit version) </pre> If it does not crash you are good. For CentOS 7 users: If the following error occurs: "findem64.exe: error while loading shared libraries: libg2c.so.0: cannot open shared object file: No such file or directory" Follow this link --> https://centos.pkgs.org/7/centos-x86_64/compat-libf2c-34-3.4.6-32.el7.x86_64.rpm.html Install this --> compat-libf2c-34-3.4.6-32.el7.x86_64.rpm Then from command line run --> rpm -ivh compat-libf2c-34-3.4.6-32.el7.x86_64.rpm Make sure the libraries provided by the rpm are present in your "LD_LIBRARY_PATH". In initial testing the libraries were in /usr/lib. If the following error occurs: "findem64.exe: error while loading shared libraries: libgfortran.so.1: cannot open shared object file: No such file or directory" Follow this link --> https://centos.pkgs.org/7/centos-x86_64/compat-libgfortran-41-4.1.2-44.el7.x86_64.rpm.html and install "compat-libgfortran-41-4.1.2-44.el7.x86_64.rpm" From command line run: rpm -ivh compat-libgfortran-41-4.1.2-44.el7.x86_64.rpm Make sure the libraries provided by the rpm are present in your "LD_LIBRARY_PATH". In initial testing the libraries were in /usr/lib. ______ h2. Install FindEM from source If the binary included with Appion does not work, or you wish to compile it yourself follow the instructions to [[install FindEM from source]]. ______ [[Install Grigorieff lab software|< Install Grigorieff lab software]] | [[Install Ace2|Install Ace2 >]] ______