CryoSPARC » History » Revision 2
Revision 1 (Sargis Dallakyan, 03/06/2019 06:39 PM) → Revision 2/9 (Sargis Dallakyan, 03/06/2019 07:25 PM)
h1. CryoSPARC The user is able to display cryoSPARC v2 3D refinement jobs. h2. Installing Install "MongoDB PHP Driver":https://docs.mongodb.com/ecosystem/drivers/php/. For CentOS 7 our Our centos7AutoInstallation.py does this. For CentOS 6, "update to PHP 5.6 on CentOS 6 using remi repository":https://blog.tinned-software.net/update-to-php-5-6-on-centos-6-using-remi-repository/. Then install "MongoDB PHP Driver". Add the following lines to your myamiweb/config.php <pre> // --- cryoSPARC host name and port number. --- // define('CRYOSPARC', "yourhost"); define('CRYOSPARC_PORT', "39001"); </pre> Replace yourhost, with the name or IP address of your host running cryoSPARC v2. h2. Usage In Appion menu click on cryoSPARC link. !thumbnail_image.png! Enter Project and Job ID for a cryoSPARC v2 3D refinement job and click Submit. !thumbnail_image1.png! This renders a page similar to this one: !cryosparcs.png! In the top left it shows 3D map. Wait for it to load. Depending on your network connection and the size of the map it might take a minute to load the map. At the bottom it shows output from cryoSPARC. Users can go back and add/remove cryoSPARC jobs as show below: !thumbnail_image2.png! Summary link shows cryoSPARC output similar to above.