Developers guide » History » Version 9
Amber Herold, 04/27/2011 10:30 AM
| 1 | 1 | Amber Herold | h1. Developers guide |
|---|---|---|---|
| 2 | |||
| 3 | 7 | Amber Herold | Proposed content: |
| 4 | # Development Tools |
||
| 5 | ## Redmine |
||
| 6 | ## Eclipse |
||
| 7 | ## SVN |
||
| 8 | # System Overview |
||
| 9 | ## Leginon |
||
| 10 | ### Scope |
||
| 11 | ### Windows Machine |
||
| 12 | ## Appion |
||
| 13 | ### Web Parts - web server |
||
| 14 | ### Python Parts - processing server |
||
| 15 | ### 3rd party apps |
||
| 16 | ## Clusters |
||
| 17 | # Installing Appion for development |
||
| 18 | # Myami Code Tree |
||
| 19 | # Running the code from your sandbox |
||
| 20 | # Languages and Technology |
||
| 21 | ## html, css, PHP, Python, Javascript, mySQL |
||
| 22 | ## best practices for these |
||
| 23 | # Adding a new program to the pipeline |
||
| 24 | ## python parts |
||
| 25 | ## Web Parts |
||
| 26 | ### launch page |
||
| 27 | #### parameter checking |
||
| 28 | ### reporting pages |
||
| 29 | ## Database Parts |
||
| 30 | ### python side |
||
| 31 | ### PHP side |
||
| 32 | # Testing |
||
| 33 | # Error Handling |
||
| 34 | 9 | Amber Herold | # Issue reporting and life-cycle |
| 35 | # Checking your code into the main trunk |
||
| 36 | 7 | Amber Herold | # Adding Documentation |
| 37 | # Adding pop-up Help |
||
| 38 | # Coding standards |
||
| 39 | 8 | Amber Herold | # Where to find help |
| 40 | 7 | Amber Herold | |
| 41 | 1 | Amber Herold | h2. Common variables used |
| 42 | |||
| 43 | |||
| 44 | |||
| 45 | |||
| 46 | 3 | Amber Herold | * $outdir is the directory that contains the disk, session, jobtype, but not the runname: For example: /data/appion/10dec16a/extract |
| 47 | 1 | Amber Herold | |
| 48 | 3 | Amber Herold | * $rundir = $outdir + runname, For example: /data/appion/10dec16a/extract/dogrun1 |
| 49 | 1 | Amber Herold | note: appion python code only accepts $rundir |
| 50 | |||
| 51 | * $description |
||
| 52 | |||
| 53 | * $commit |
||
| 54 | |||
| 55 | * $command |
||
| 56 | |||
| 57 | * $sessiondata' |
||
| 58 | |||
| 59 | * $sessionid vs. $sessionId vs. $expid vs. $expId |
||
| 60 | |||
| 61 | * $apix vs. $pixelsize |
||
| 62 | |||
| 63 | * $box vs. $boxsize |
||
| 64 | 4 | Neil Voss | |
| 65 | h2. variable dump |
||
| 66 | |||
| 67 | <pre> |
||
| 68 | cd ~/myami/myamiweb/processing |
||
| 69 | cat *.php | grep '\$[A-Za-z]' | sed 's/\$_[A-Za-z]*//' | sed 's/[^$]*\(\$[A-Za-z0-9]*\)[^$]*/\1 \ |
||
| 70 | /g' | sort | uniq -c | sort -rn | head -50 |
||
| 71 | </pre> |
||
| 72 | |||
| 73 | <# of occurrences> <variable name> |
||
| 74 | <pre> |
||
| 75 | 1066 $command |
||
| 76 | 1001 $particle |
||
| 77 | 943 $ |
||
| 78 | 854 $expId |
||
| 79 | 630 $i |
||
| 80 | 387 $formAction |
||
| 81 | 385 $html |
||
| 82 | 366 $javascript |
||
| 83 | 349 $outdir |
||
| 84 | 337 $projectId |
||
| 85 | 327 $runname |
||
| 86 | 326 $sessionId |
||
| 87 | 299 $extra |
||
| 88 | 213 $description |
||
| 89 | 200 $graph |
||
| 90 | 198 $stackid |
||
| 91 | 198 $sessioninfo |
||
| 92 | 186 $apix |
||
| 93 | 180 $sessiondata |
||
| 94 | 162 $display |
||
| 95 | 160 $title |
||
| 96 | 158 $templatetable |
||
| 97 | 157 $user |
||
| 98 | 136 $line |
||
| 99 | 131 $javafunctions |
||
| 100 | 127 $heading |
||
| 101 | 126 $numpart |
||
| 102 | 125 $jobinfo |
||
| 103 | 117 $errors |
||
| 104 | 114 $stackinfo |
||
| 105 | 110 $t |
||
| 106 | 110 $key |
||
| 107 | 109 $s |
||
| 108 | 108 $templateinfo |
||
| 109 | 101 $sessionpath |
||
| 110 | 98 $bin |
||
| 111 | 96 $tomogram |
||
| 112 | 96 $sub |
||
| 113 | 96 $nproc |
||
| 114 | 96 $filename |
||
| 115 | 94 $stackId |
||
| 116 | 91 $headinfo |
||
| 117 | 90 $sessionname |
||
| 118 | 90 $data |
||
| 119 | 89 $j |
||
| 120 | 89 $cmd |
||
| 121 | 89 $box |
||
| 122 | 89 $alignId |
||
| 123 | 86 $r |
||
| 124 | </pre> |
||
| 125 | 5 | Amber Herold | |
| 126 | 6 | Amber Herold | h3. [[Appion Testing|Automated testing]] |
| 127 | 1 | Amber Herold | |
| 128 | 6 | Amber Herold | |
| 129 | h3. [[Using basicReport.inc]] for PHP report pages |