Example config file » History » Version 1
Amber Herold, 08/02/2011 11:17 AM
1 | 1 | Amber Herold | h1. Example config file |
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2 | |||
3 | <pre> |
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4 | <?php |
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5 | |||
6 | /** |
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7 | * The Leginon software is Copyright 2010 |
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8 | * The Scripps Research Institute, La Jolla, CA |
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9 | * For terms of the license agreement |
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10 | * see http://emg.nysbc.org/software/leginon-license |
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11 | * |
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12 | */ |
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13 | |||
14 | /** |
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15 | * Please visit http://yourhost/myamiwebfolder/setup |
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16 | * for automatically setup this config file for the |
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17 | * first time. |
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18 | */ |
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19 | |||
20 | |||
21 | require_once 'inc/config.inc'; |
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22 | define('WEB_ROOT',dirname(__FILE__)); |
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23 | |||
24 | // --- define myamiweb tools base --- // |
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25 | define('PROJECT_NAME',"myamiweb"); |
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26 | define('PROJECT_TITLE',"Ambers Trunk Appion and Leginon Tools"); |
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27 | |||
28 | // --- define site base path -- // |
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29 | // --- This should be changed if the myamiweb directory is located -- // |
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30 | // --- in a sub-directory of the Apache web directory. -- // |
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31 | // --- ex. myamiweb is in /var/www/html/applications/myamiweb/ then -- // |
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32 | // --- change "myamiweb to "applications/myamiweb" -- // |
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33 | define('BASE_PATH',"~amber/myamiweb"); |
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34 | |||
35 | define('BASE_URL',"/~amber/myamiweb/"); |
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36 | define('PROJECT_URL',"/~amber/myamiweb/project/"); |
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37 | |||
38 | // --- myamiweb login --- // |
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39 | // Browse to the administration tools in myamiweb prior to |
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40 | // changing this to true to populate DB tables correctly. |
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41 | define('ENABLE_LOGIN', true); |
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42 | |||
43 | // --- Administrator email title and email address -- // |
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44 | define('EMAIL_TITLE',"asdfasf"); |
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45 | define('ADMIN_EMAIL',"amber@scripps.edu"); |
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46 | |||
47 | // --- When 'ENABLE_SMTP set to true, email will send out -- // |
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48 | // --- via ADMIN_EMIL's SMTP server. --// |
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49 | define('ENABLE_SMTP', false); |
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50 | define('SMTP_HOST',""); |
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51 | |||
52 | // --- Check this with your email administrator -- // |
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53 | // --- Set it to true if your SMTP server requires authentication -- // |
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54 | define('SMTP_AUTH', false); |
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55 | |||
56 | // --- If SMTP_AUTH is not required(SMTP_AUTH set to false, -- // |
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57 | // --- no need to fill in 'SMTP_USERNAME' & SMTP_PASSWORD -- // |
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58 | define('SMTP_USERNAME',""); |
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59 | define('SMTP_PASSWORD',""); |
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60 | |||
61 | // --- Set your MySQL database server parameters -- // |
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62 | define('DB_HOST',"cronus4.scripps.edu"); |
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63 | define('DB_USER',ask someone); |
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64 | define('DB_PASS',ask someone); |
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65 | define('DB_LEGINON',"dbemdata"); |
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66 | define('DB_PROJECT',"project"); |
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67 | |||
68 | // --- default URL for project section --- // |
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69 | define('VIEWER_URL', BASE_URL."3wviewer.php?expId="); |
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70 | define('SUMMARY_URL', BASE_URL."summary.php?expId="); |
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71 | define('UPLOAD_URL', BASE_URL."processing/uploadimage.php"); |
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72 | |||
73 | // --- Set cookie session time -- // |
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74 | define('COOKIE_TIME', 0); //0 is never expire. |
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75 | |||
76 | // --- defaut user group -- // |
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77 | define('GP_USER', 'users'); |
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78 | |||
79 | // --- XML test dataset -- // |
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80 | $XML_DATA = "test/viewerdata.xml"; |
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81 | |||
82 | // --- Set Default table definition -- // |
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83 | define('DEF_PROCESSING_TABLES_FILE', "defaultprocessingtables.xml"); |
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84 | define('DEF_PROCESSING_PREFIX',"ap"); |
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85 | |||
86 | // --- Set External SQL server here (use for import/export application) -- // |
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87 | // --- You can add as many as you want, just copy and paste the block -- // |
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88 | // --- to a new one and update the connection parameters -- // |
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89 | // --- $SQL_HOSTS['example_host_name']['db_host'] = 'example_host_name'; -- // |
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90 | // --- $SQL_HOSTS['example_host_name']['db_user'] = 'usr_object'; -- // |
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91 | // --- $SQL_HOSTS['example_host_name']['db_pass'] = ''; -- // |
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92 | // --- $SQL_HOSTS['example_host_name']['db'] = 'legniondb'; -- // |
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93 | |||
94 | $SQL_HOSTS[DB_HOST]['db_host'] = DB_HOST; |
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95 | $SQL_HOSTS[DB_HOST]['db_user'] = DB_USER; |
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96 | $SQL_HOSTS[DB_HOST]['db_pass'] = DB_PASS; |
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97 | $SQL_HOSTS[DB_HOST]['db'] = DB_LEGINON; |
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98 | |||
99 | // --- path to main --- // |
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100 | set_include_path(dirname(__FILE__).PATH_SEPARATOR |
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101 | .dirname(__FILE__)."/project".PATH_SEPARATOR |
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102 | .dirname(__FILE__)."/lib".PATH_SEPARATOR |
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103 | .dirname(__FILE__)."/lib/PEAR"); |
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104 | |||
105 | // --- add plugins --- // |
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106 | // --- uncomment to enable processing web pages -- // |
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107 | addplugin("processing"); |
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108 | |||
109 | define('DEFAULT_APPION_PATH',"/ami/data00/appion/"); |
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110 | |||
111 | // --- Add as many processing hosts as you like -- // |
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112 | // --- Please enter your processing host information associate with -- // |
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113 | // --- Maximum number of the processing nodes -- // |
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114 | // --- $PROCESSING_HOSTS[] = array('host' => 'host1.school.edu', 'nproc' => 4); -- // |
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115 | // --- $PROCESSING_HOSTS[] = array('host' => 'host2.school.edu', 'nproc' => 8); -- // |
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116 | |||
117 | $PROCESSING_HOSTS[] = array('host' => 'guppy.scripps.edu', |
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118 | 'nproc' => 8, |
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119 | 'nodesdef' => '2', |
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120 | 'nodesmax' => '8', |
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121 | 'ppndef' => '8', |
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122 | 'ppnmax' => '8', |
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123 | 'reconpn' => '8', |
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124 | 'walltimedef' => '2', |
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125 | 'walltimemax' => '2', |
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126 | 'cputimedef' => '2', |
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127 | 'cputimemax' => '2', |
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128 | 'memorymax' => '30', |
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129 | 'appionbin' => '/opt/myamisnap/bin/appion/', |
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130 | 'baseoutdir' => DEFAULT_APPION_PATH, |
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131 | 'localhelperhost' => 'guppy.scripps.edu', |
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132 | 'dirsep' => '/' ); |
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133 | |||
134 | $PROCESSING_HOSTS[] = array('host' => 'garibaldi.scripps.edu', |
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135 | 'nproc' => 8, |
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136 | 'nodesdef' => '16', |
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137 | 'nodesmax' => '280', |
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138 | 'ppndef' => '4', |
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139 | 'ppnmax' => '8', |
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140 | 'reconpn' => '4', |
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141 | 'walltimedef' => '240', |
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142 | 'walltimemax' => '240', |
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143 | 'cputimedef' => '240', |
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144 | 'cputimemax' => '240', |
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145 | 'memorymax' => '30', |
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146 | 'appionbin' => '~bcarr/appionbin/', |
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147 | 'baseoutdir' => '', //sends appion procession output to a location under the users home directory on the remote host |
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148 | 'localhelperhost' => 'amibox03.scripps.edu', |
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149 | 'dirsep' => '/' ); |
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150 | |||
151 | |||
152 | // --- register your cluster configure file below i.e (default_cluster) --- // |
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153 | // --- $CLUSTER_CONFIGS[] = 'cluster1'; -- // |
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154 | // --- $CLUSTER_CONFIGS[] = 'cluster2'; -- // |
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155 | |||
156 | //$CLUSTER_CONFIGS[] = 'guppy_cluster'; |
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157 | //$CLUSTER_CONFIGS[] = 'garibaldi'; |
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158 | //$CLUSTER_CONFIGS[] = 'test1_cluster'; |
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159 | //$CLUSTER_CONFIGS[] = 'test2_cluster'; |
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160 | |||
161 | // --- Microscope spherical aberration constant |
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162 | // --- Example : 2.0 --- // |
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163 | define('DEFAULTCS',"2.0"); |
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164 | |||
165 | // --- Restrict file server if you want --- // |
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166 | // --- Add your allowed processing directory as string in the array |
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167 | $DATA_DIRS = array(); |
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168 | |||
169 | // --- Enable Image Cache --- // |
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170 | define('ENABLE_CACHE', false); |
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171 | // --- caching location --- // |
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172 | // --- please make sure the apache user has write access to this folder --- // |
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173 | // --- define('CACHE_PATH', "/srv/www/cache/"); --- // |
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174 | define('CACHE_PATH',""); |
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175 | define('CACHE_SCRIPT', WEB_ROOT.'/makejpg.php'); |
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176 | |||
177 | // --- define Flash player base url --- // |
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178 | define('FLASHPLAYER_URL', "/flashplayer/"); |
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179 | |||
180 | // --- define python commands - path --- // |
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181 | |||
182 | // to download images as TIFF or JPEG |
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183 | // $pythonpath="/your/site-packages"; |
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184 | // putenv("PYTHONPATH=$pythonpath"); |
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185 | |||
186 | // To use mrc2any, you need to install the pyami package which is part |
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187 | // of myami. See installation documentation for help. |
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188 | // --- define('MRC2ANY', "/usr/bin/mrc2any" --- // |
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189 | define('MRC2ANY',"/usr/bin/mrc2any"); |
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190 | |||
191 | // --- Check if IMAGIC is installed and running, otherwise hide all functions --- // |
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192 | define('HIDE_IMAGIC', false); |
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193 | |||
194 | // --- Check if MATLAB is installed and running, otherwise hide all functions --- // |
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195 | define('HIDE_MATLAB', false); |
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196 | |||
197 | // --- hide processing tools still under development. --- // |
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198 | define('HIDE_FEATURE', false); |
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199 | |||
200 | // --- temporary images upload directory --- // |
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201 | define('TEMP_IMAGES_DIR',"/tmp"); |
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202 | |||
203 | // --- use appion warpper --- // |
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204 | define('USE_APPION_WRAPPER', true); |
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205 | // --- define('APPION_WRAPPER_PATH', ""); --- // |
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206 | define('APPION_WRAPPER_PATH',"/opt/myamisnap/bin/appion"); |
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207 | |||
208 | |||
209 | // --- sample tracking ---// |
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210 | define('SAMPLE_TRACK', false); |
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211 | |||
212 | // --- exclude projects in statistics. give a string with numbers separated by ',' ---// |
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213 | // --- for example, "1,2" ---// |
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214 | define('EXCLUDED_PROJECTS',""); |
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215 | |||
216 | |||
217 | // --- hide processing tools still under development. --- // |
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218 | define('HIDE_TEST_TOOLS', false); |
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219 | |||
220 | $TEST_SESSIONS = array( |
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221 | 'zz07jul25b' |
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222 | ,'zz06apr27c' |
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223 | ,'zz09feb12b' |
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224 | ,'zz09apr14b' |
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225 | ,'zz09feb18c' |
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226 | ); |
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227 | |||
228 | ?> |
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229 | </pre> |