Appion

h1. Install Appion Packages

h3. Install the appion python package

The pysetup.py script above did not install the appion package.  Since the appion package includes many executable scripts, it is important that you know where they are being installed.  To prevent cluttering up the /usr/bin directory, you can specify an alternative path, typically /usr/local/bin, or a directory of your choice that you will later add to your PATH environment variable.  Install appion like this:

<pre>

cd appion

sudo python setup.py install --install-scripts=/usr/local/bin

</pre>

{{include(appion:Install Appion Packages Shared)}}

Finally, you will need to set the the MATLABPATH environment variable in order to get the Appion utilities that use Matlab to work.

For bash:

<pre>

export MATLABPATH=$MATLABPATH:<your_appion_directory>/ace

</pre>

or C shell

<pre>

setenv MATLABPATH $MATLABPATH:<your_appion_directory>/ace

</pre>

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[[Perform system check|< Perform system check]] | [[Configure leginon.cfg|Configure leginon.cfg >]]

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