Install Appion Packages » History » Version 31
Anchi Cheng, 02/24/2012 01:09 PM
1 | 28 | Anchi Cheng | h1. Install Appion Packages |
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3 | h3. Install the appion python package |
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5 | 30 | Amber Herold | Since the appion package includes many executable scripts, it is important that you know where they are being installed. To prevent cluttering up the /usr/bin directory, you can specify an alternative path, typically /usr/local/bin, or a directory of your choice that you will later add to your PATH environment variable. Install appion like this: |
6 | 28 | Anchi Cheng | <pre> |
7 | 30 | Amber Herold | cd /path/to/myami-VERSION/appion |
8 | 31 | Anchi Cheng | sudo python setup.py install --install-scripts=/usr/local/bin/appion |
9 | 28 | Anchi Cheng | </pre> |
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11 | 29 | Anchi Cheng | h3. Install all the myami python packages _except appion_ using the following script: |
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13 | 27 | Anchi Cheng | {{include(appion:Install Appion Packages Shared)}} |
14 | 28 | Anchi Cheng | |
15 | Finally, you will need to set the the MATLABPATH environment variable in order to get the Appion utilities that use Matlab to work. |
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16 | For bash: |
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17 | <pre> |
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18 | export MATLABPATH=$MATLABPATH:<your_appion_directory>/ace |
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19 | </pre> |
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20 | or C shell |
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21 | <pre> |
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22 | setenv MATLABPATH $MATLABPATH:<your_appion_directory>/ace |
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23 | </pre> |
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24 | 2 | Amber Herold | |
25 | ______ |
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27 | 3 | Amber Herold | [[Perform system check|< Perform system check]] | [[Configure leginon.cfg|Configure leginon.cfg >]] |
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29 | 1 | Amber Herold | ______ |